supposedly this is THE correct implementation, but more testing is needed

[samtools.git] / bam_mcns.h

diff --git a/bam_mcns.h b/bam_mcns.h
index 0781975361a732ecf8ec285948832e4458d3e0a4..6f1a3109b666da3c59dd056922135513ad38faf3 100644 (file)
--- a/bam_mcns.h
+++ b/bam_mcns.h
@@ -11,9 +11,7 @@ typedef struct {
        int ref, alt, alt2;
        double f_em, f_naive, f_nielsen;
        // O(n^2)
-       double PD, p_ref, f_exp;
-       // O(n^3)
-       double f_map, p_map; // map=maximum a posterior
+       double p_ref, f_exp;
 } mc_rst_t;
 
 #define MC_PTYPE_FULL  1