added revised MAQ error model

[samtools.git] / bam_maqcns.h

diff --git a/bam_maqcns.h b/bam_maqcns.h
index 6cc5355fc2db2b1b19e6a3d2d330306a240fa15a..28733a5dbd8f467105d736bc4ffa1919be4d9e56 100644 (file)
--- a/bam_maqcns.h
+++ b/bam_maqcns.h
@@ -3,11 +3,15 @@
 
 #include "glf.h"
 
+#define BAM_ERRMOD_MAQ2 0
+#define BAM_ERRMOD_MAQ  1
+#define BAM_ERRMOD_SOAP 2
+
 struct __bmc_aux_t;
 
 typedef struct {
        float het_rate, theta;
-       int n_hap, cap_mapQ, is_soap;
+       int n_hap, cap_mapQ, errmod;
 
        float eta, q_r;
        double *fk, *coef;