Release samtools-0.1.12

[samtools.git] / bam_index.c

diff --git a/bam_index.c b/bam_index.c
index 0638a2e826a1ceb10f86a144ca42c78355bcae35..328f011c16ccf4a9a558702317ecdecfbcc5212a 100644 (file)
--- a/bam_index.c
+++ b/bam_index.c
@@ -212,7 +212,7 @@ bam_index_t *bam_index_core(bamFile fp)
        }
        if (save_tid >= 0) {
                insert_offset(idx->index[save_tid], save_bin, save_off, bam_tell(fp));
-               insert_offset(idx->index[save_tid], BAM_MAX_BIN, off_beg, off_end);
+               insert_offset(idx->index[save_tid], BAM_MAX_BIN, off_beg, bam_tell(fp));
                insert_offset(idx->index[save_tid], BAM_MAX_BIN, n_mapped, n_unmapped);
        }
        merge_chunks(idx);