* samtools-0.1.6-18 (r493)

[samtools.git] / bam_import.c

diff --git a/bam_import.c b/bam_import.c
index 34cc776fed8ffb49575df2baebc9ae33bc64c7ad..9d463d102bbb254ddf5a5b9bf32b5f216aac2187 100644 (file)
--- a/bam_import.c
+++ b/bam_import.c
@@ -179,10 +179,14 @@ int sam_header_parse(bam_header_t *h)
        h->n_targets = 0; h->target_len = 0; h->target_name = 0;
        if (h->l_text < 3) return 0;
        if (h->dict == 0) h->dict = sam_header_parse2(h->text);
-       h->target_name = sam_header2list(h->dict, "SQ", "SN", &h->n_targets);
+       tmp = sam_header2list(h->dict, "SQ", "SN", &h->n_targets);
        if (h->n_targets == 0) return 0;
+       h->target_name = calloc(h->n_targets, sizeof(void*));
+       for (i = 0; i < h->n_targets; ++i)
+               h->target_name[i] = strdup(tmp[i]);
+       free(tmp);
        tmp = sam_header2list(h->dict, "SQ", "LN", &h->n_targets);
-       h->target_len = (uint32_t*)calloc(h->n_targets, 4);
+       h->target_len = calloc(h->n_targets, 4);
        for (i = 0; i < h->n_targets; ++i)
                h->target_len[i] = atoi(tmp[i]);
        free(tmp);