* samtools-0.1.2-10

[samtools.git] / bam_import.c

diff --git a/bam_import.c b/bam_import.c
index 4b7bb2122e0e046bf65874bdda27e03828479b06..7742d2fbe2c17eacdcc131bcda256a93618e8d01 100644 (file)
--- a/bam_import.c
+++ b/bam_import.c
@@ -209,7 +209,7 @@ int sam_read1(tamFile fp, bam_header_t *header, bam1_t *b)
                        if (*s) parse_error(fp->n_lines, "unmatched CIGAR operation");
                        c->bin = bam_reg2bin(c->pos, bam_calend(c, bam1_cigar(b)));
                        doff += c->n_cigar * 4;
-               }
+               } else c->bin = bam_reg2bin(c->pos, c->pos + 1);
        }
        { // mtid, mpos, isize
                ret = ks_getuntil(ks, 0, str, &dret); c->mtid = strcmp(str->s, "=")? bam_get_tid(header, str->s) : c->tid;