* added bam_verbose global variable

[samtools.git] / bam2depth.c

diff --git a/bam2depth.c b/bam2depth.c
index 96fad653d32563a6077268c1f47fc83244d99667..95588f96b5a4ebc1a531bc11bb5c2c43183bf08d 100644 (file)
--- a/bam2depth.c
+++ b/bam2depth.c
@@ -80,7 +80,7 @@ int main_depth(int argc, char *argv[])
        while (bam_mplp_auto(mplp, &tid, &pos, n_plp, plp) > 0) { // come to the next covered position
                if (pos < beg || pos >= end) continue; // out of range; skip
                if (bed && bed_overlap(bed, h->target_name[tid], pos, pos + 1) == 0) continue; // not in BED; skip
-               printf("%s\t%d", h->target_name[tid], pos+1);
+               fputs(h->target_name[tid], stdout); printf("\t%d", pos+1);
                for (i = 0; i < n; ++i) {
                        int j, m = 0;
                        for (j = 0; j < n_plp[i]; ++j) {