New -p switch for increased sensititivy of indel-calling. Here -m and -F are used...

[samtools.git] / bam2bcf.h

diff --git a/bam2bcf.h b/bam2bcf.h
index a4d8ca5128319800c91303a022a4e53ac6aea599..a31ac9dece3d7ed9a6f740e3452985c50abc6c67 100644 (file)
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -16,6 +16,7 @@ typedef struct __bcf_callaux_t {
        int openQ, extQ, tandemQ; // for indels
        int min_support; // for collecting indel candidates
        double min_frac; // for collecting indel candidates
+    int per_sample_flt; // indel filtering strategy
        // for internal uses
        int max_bases;
        int indel_types[4];