typedef struct __bcf_callaux_t bcf_callaux_t;
typedef struct {
- int depth, d[4], ed[4], qsum[4];
- uint64_t sum_Q2;
+ int depth, qsum[4];
+ int anno[16];
float p[25];
} bcf_callret1_t;
typedef struct {
int a[5]; // alleles: ref, alt, alt2, alt3
int n, n_alleles, shift, ori_ref, unseen;
- int d[4], ed[4], depth, rmsQ;
+ int anno[16], depth;
uint8_t *PL;
} bcf_call_t;