backup commit

[samtools.git] / bam2bcf.h

diff --git a/bam2bcf.h b/bam2bcf.h
index 46f91f9c7ad282ad033ce6391461b18f34d83496..b2b1825cd59a17a1973b040f722f1efb13ef24f0 100644 (file)
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -31,7 +31,7 @@ typedef struct __bcf_callaux_t {
 
 typedef struct {
        int depth, n_supp, ori_depth, qsum[4];
-       int anno[16];
+       unsigned int anno[16];
        float p[25];
 } bcf_callret1_t;
 
@@ -40,10 +40,11 @@ typedef struct {
     float qsum[4];
        int n, n_alleles, shift, ori_ref, unseen;
        int n_supp; // number of supporting non-reference reads
-       int anno[16], depth, ori_depth;
+       unsigned int anno[16], depth, ori_depth;
        uint8_t *PL;
     float vdb; // variant distance bias
     float read_pos_bias;
+    struct { float avg, var; int dp; } read_pos;
 } bcf_call_t;
 
 #ifdef __cplusplus