Fix missing declaration for getopt on Mac OS X

[samtools.git] / bam.h

diff --git a/bam.h b/bam.h
index 82f1ffab1db81ffad94751cc40406af367a00ad3..f3f37f3ecefff6509b7480c52eed0f0090a1fd2f 100644 (file)
--- a/bam.h
+++ b/bam.h
@@ -776,5 +776,17 @@ static inline int bam_aux_type2size(int x)
        else return 0;
 }
 
+/*********************************
+ *** Compatibility with htslib ***
+ *********************************/
+
+typedef bam_header_t bam_hdr_t;
+
+#define bam_get_qname(b) bam1_qname(b)
+#define bam_get_cigar(b) bam1_cigar(b)
+
+#define bam_hdr_read(fp) bam_header_read(fp)
+#define bam_hdr_write(fp, h) bam_header_write(fp, h)
+#define bam_hdr_destroy(fp) bam_header_destroy(fp)
 
 #endif