* samtools-0.1.4-8 (r338)

[samtools.git] / bam.h

diff --git a/bam.h b/bam.h
index 9330075ed10bcbcd67e3fba245f87909b56b42ef..c635e72767e31852ddf8b2759a3d9493d13e58bc 100644 (file)
--- a/bam.h
+++ b/bam.h
@@ -100,7 +100,7 @@ typedef struct {
        int32_t n_targets;
        char **target_name;
        uint32_t *target_len;
-       void *hash;
+       void *hash, *rg2lib;
        int l_text;
        char *text;
 } bam_header_t;
@@ -317,9 +317,16 @@ extern "C" {
 
        bam_header_t *sam_header_read(tamFile fp);
        int sam_header_parse(bam_header_t *h);
+       int sam_header_parse_rg(bam_header_t *h);
 
 #define sam_write1(header, b) bam_view1(header, b)
 
+       int bam_strmap_put(void *strmap, const char *rg, const char *lib);
+       const char *bam_strmap_get(const void *strmap, const char *rg);
+       void *bam_strmap_dup(const void*);
+       void *bam_strmap_init();
+       void bam_strmap_destroy(void *strmap);
+
        /*!
          @abstract Initialize a header structure.
          @return   the pointer to the header structure
@@ -593,7 +600,7 @@ extern "C" {
 
        void bam_aux_append(bam1_t *b, const char tag[2], char type, int len, uint8_t *data);
        // uint8_t *bam_aux_get_core(bam1_t *b, const char tag[2]); // an alias of bam_aux_get()
-       uint8_t *bam_aux_get(bam1_t *b, const char tag[2]);
+       uint8_t *bam_aux_get(const bam1_t *b, const char tag[2]);
        int32_t bam_aux2i(const uint8_t *s);
        float bam_aux2f(const uint8_t *s);
        double bam_aux2d(const uint8_t *s);