* Merge from branches/dev/

[samtools.git] / bam.c

diff --git a/bam.c b/bam.c
index 6ccca7c0a1153c336a8e914742f5519abacb6edd..e470e629430cc23e0d9426dcdd1b3db764f6a1d0 100644 (file)
--- a/bam.c
+++ b/bam.c
@@ -249,6 +249,7 @@ void bam_view1(const bam_header_t *header, const bam1_t *b)
        }
        putchar('\t');
        if (c->mtid < 0) printf("*\t");
+       else if (c->mtid == c->tid) printf("=\t");
        else printf("%s\t", header->target_name[c->mtid]);
        printf("%d\t%d\t", c->mpos + 1, c->isize);
        for (i = 0; i < c->l_qseq; ++i) putchar(bam_nt16_rev_table[bam1_seqi(s, i)]);