System libraries go *after* user libraries in link commands, because

[samtools.git] / Makefile

diff --git a/Makefile b/Makefile
index 13d4a7698e1ded63520b3c8c7a117a45d91af1a1..e28822eabfa7499e5cb8d5a1a5198360e73630ee 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -40,7 +40,7 @@ libbam.a:$(LOBJS)
                $(AR) -cru $@ $(LOBJS)
 
 samtools:lib-recur $(AOBJS)
-               $(CC) $(CFLAGS) -o $@ $(AOBJS) libbam.a -lm $(LIBPATH) $(LIBCURSES) -lz -Lbcftools -lbcf
+               $(CC) $(CFLAGS) -o $@ $(AOBJS) -Lbcftools $(LIBPATH) libbam.a -lbcf $(LIBCURSES) -lm -lz
 
 razip:razip.o razf.o $(KNETFILE_O)
                $(CC) $(CFLAGS) -o $@ razf.o razip.o $(KNETFILE_O) -lz