Revert one of my earlier changes - Heng was right, CIGAR P not sensible in a padded...

[samtools.git] / Makefile

diff --git a/Makefile b/Makefile
index 0d3eb4cde7ca8c894dc2bbe01c70284d09ede3e1..dbd90af737a7f360df90e110f66a30a915bba435 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -9,7 +9,7 @@ LOBJS=          bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
 AOBJS=         bam_tview.o bam_plcmd.o sam_view.o \
                        bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o \
                        bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
-                       cut_target.o phase.o bam2depth.o padding.o
+                       cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o
 PROG=          samtools
 INCLUDES=      -I.
 SUBDIRS=       . bcftools misc
@@ -51,7 +51,7 @@ razip:razip.o razf.o $(KNETFILE_O)
 bgzip:bgzip.o bgzf.o $(KNETFILE_O)
                $(CC) $(CFLAGS) -o $@ bgzf.o bgzip.o $(KNETFILE_O) -lz -lpthread
 
-bgzf.o:bgzf.h
+bgzf.o:bgzf.c bgzf.h
                $(CC) -c $(CFLAGS) $(DFLAGS) -DBGZF_CACHE $(INCLUDES) bgzf.c -o $@
 
 razip.o:razf.h