Update BIN values in 'samtools depad'

[samtools.git] / Makefile

diff --git a/Makefile b/Makefile
index c7ac7fd5ecc7f58b3a3ea8fc4f53f9852b86086a..a584c7aded36099624707490163d2c10ea7097d0 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -1,5 +1,11 @@
+# The default version string in bam.h and bcftools/bcf.h can be overriden directly
+#   make VERSION="-DVERSION='\\\"my-version\\\"'"
+# or using the git-stamp rule
+#   make git-stamp
+VERSION=
+
 CC=                    gcc
-CFLAGS=                -g -Wall -O2
+CFLAGS=                -g -Wall $(VERSION) -O2
 #LDFLAGS=              -Wl,-rpath,\$$ORIGIN/../lib
 DFLAGS=                -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1
 KNETFILE_O=    knetfile.o
@@ -10,13 +16,14 @@ AOBJS=              bam_tview.o bam_plcmd.o sam_view.o \
                        bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o \
                        bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
                        cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o \
-                       bam_tview_curses.o
+                       bam_tview_curses.o bam_tview_html.o
 PROG=          samtools
 INCLUDES=      -I.
 SUBDIRS=       . bcftools misc
 LIBPATH=
 LIBCURSES=     -lcurses # -lXCurses
 
+
 .SUFFIXES:.c .o
 .PHONY: all lib
 
@@ -35,6 +42,9 @@ all-recur lib-recur clean-recur cleanlocal-recur install-recur:
 
 all:$(PROG)
 
+git-stamp:
+               make VERSION="-DVERSION='\\\"`git describe --always --dirty`\\\"'"
+
 .PHONY:all lib clean cleanlocal
 .PHONY:all-recur lib-recur clean-recur cleanlocal-recur install-recur
 
@@ -64,7 +74,8 @@ bam_plcmd.o:bam.h faidx.h bcftools/bcf.h bam2bcf.h
 bam_index.o:bam.h khash.h ksort.h razf.h bam_endian.h
 bam_lpileup.o:bam.h ksort.h
 bam_tview.o:bam.h faidx.h bam_tview.h
-bam_tview_curses.o:bam.h faidx.h bam_tview.h bam_tview_curses.h
+bam_tview_curses.o:bam.h faidx.h bam_tview.h
+bam_tview_html.o:bam.h faidx.h bam_tview.h
 bam_sort.o:bam.h ksort.h razf.h
 bam_md.o:bam.h faidx.h
 sam_header.o:sam_header.h khash.h