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2014-06-08 Bo LiFor genome BAM, modified MD tag accordingly commit | commitdiff | tree | snapshot
2014-06-08 Bo LiRenamed makefile as Makefile commit | commitdiff | tree | snapshot
2014-06-06 Bo LiModified the use of uniform_01 commit | commitdiff | tree | snapshot
2014-06-06 Bo LiUpdated boost to v1.55.0 commit | commitdiff | tree | snapshot
2014-06-06 Bo LiAdded posterior standard deviation of counts as output... commit | commitdiff | tree | snapshot
2014-06-06 Bo LiAdded --seed option to set random number generator... commit | commitdiff | tree | snapshot
2014-06-05 Bo LiModified RSEM perl scripts so that RSEM directory will... commit | commitdiff | tree | snapshot
2014-06-05 Bo LiRemoved '--no-bowtie' and '--no-ntog' options in 'rsem... commit | commitdiff | tree | snapshot
2014-06-05 Bo LiGenerated two index multi-Fasta files instead, one... commit | commitdiff | tree | snapshot
2014-05-27 Bo LiWHAT_IS_NEW is updated commit | commitdiff | tree | snapshot
2014-05-27 Bo LiChanged the behavior of parsing GTF file. Now if a... commit | commitdiff | tree | snapshot
2014-04-03 Bo LiUse PATH env to instead the variable commit | commitdiff | tree | snapshot
2014-03-27 Bo LiModified the acknowledgement section of README.md commit | commitdiff | tree | snapshot
2014-03-27 Bo Li Modified the transcript extraction behavior of 'rsem... commit | commitdiff | tree | snapshot
2014-03-22 Bo LiAdded '--seed' option for 'rsem-simulate-reads' commit | commitdiff | tree | snapshot
2014-03-21 Bo LiModified the shebang line for perl scripts commit | commitdiff | tree | snapshot
2014-03-21 Bo LiAdded support for allele-specific expression estimation commit | commitdiff | tree | snapshot
2014-03-09 Bo LiFixed a typo in rsem-calculate-expression's document... commit | commitdiff | tree | snapshot
2014-02-14 Bo LiAdded Bowtie 2 support commit | commitdiff | tree | snapshot
2014-02-01 Bo LiFixed a bug which will lead to out-of-memory error... commit | commitdiff | tree | snapshot
2014-01-11 Bo LiRemoved unnecessary spaces in POD doc of rsem-calculate... commit | commitdiff | tree | snapshot
2014-01-09 Bo LiAdded update samtools to WHAT_IS_NEW commit | commitdiff | tree | snapshot
2014-01-09 Bo LiModified WHAT_IS_NEW for RSEM v1.2.9 commit | commitdiff | tree | snapshot
2014-01-09 Bo LiFixed a problem that will lead compilation errors for... commit | commitdiff | tree | snapshot
2014-01-09 Bo LiREADME.md is updated commit | commitdiff | tree | snapshot
2014-01-09 Bo LiUpdated samtools to 0.1.19 commit | commitdiff | tree | snapshot
2013-12-02 Bo LiAdded a file describing the format of sample_name.stat... commit | commitdiff | tree | snapshot
2013-11-22 Bo LiProvided a more detailed description for how to simulat... commit | commitdiff | tree | snapshot
2013-09-25 Bo LiAdded a line in WHAT_IS_NEW for renaming of quality... commit | commitdiff | tree | snapshot
2013-09-07 Bo LiFixed a displaying problem for rsem-run-ebseq's Pod... commit | commitdiff | tree | snapshot
2013-09-07 Bo LiFixed loading library problem for EBSeq/install commit | commitdiff | tree | snapshot
2013-09-07 Bo LiFixed a bug for adding EBSeq's local library path commit | commitdiff | tree | snapshot
2013-09-07 Bo LiChanged WHAT_IS_NEW commit | commitdiff | tree | snapshot
2013-09-07 Bo Li'rsem-run-ebseq': Added 'output_file.condmeans' for... commit | commitdiff | tree | snapshot
2013-09-02 Bo LiAdded support for DE analysis on multiple conditions... commit | commitdiff | tree | snapshot
2013-08-28 Bo LiRenamed --phred33-quals, --phred64-quals, and --solexa... commit | commitdiff | tree | snapshot
2013-08-21 Bo LiFixed a minor bug which only affects paired-end reads... commit | commitdiff | tree | snapshot
2013-07-31 Bo LiInstall the latest version of EBSeq from Bioconductor... commit | commitdiff | tree | snapshot
2013-07-04 Bo LiFixed a bug in rsem-find-DE, which will crash the scrip... commit | commitdiff | tree | snapshot
2013-06-26 Bo LiUpdated EBSeq from v1.1.5 to v1.1.6 and fixed a bug... commit | commitdiff | tree | snapshot
2013-04-15 Bo LiModifed README.md and WHAT_IS_NEW commit | commitdiff | tree | snapshot
2013-04-15 Bo LiModified wiggle.cpp & wiggle.h for more accurate floati... commit | commitdiff | tree | snapshot
2013-04-15 Bo LiModified my_assert.h to postpone error message string... commit | commitdiff | tree | snapshot
2013-04-05 Bo LiRemoved a too stringent sanity check in rsem-gen-transc... commit | commitdiff | tree | snapshot
2013-03-27 Bo Liremove .gitignore from the staging area commit | commitdiff | tree | snapshot
2013-03-22 Bo LiAdded some user-friendly error messages for BamConverter.h commit | commitdiff | tree | snapshot
2013-03-22 Bo LiModified rsem-tbam2gbam so that the original alignment... commit | commitdiff | tree | snapshot
2013-01-27 Bo LiFixed a bug that will lead perl scripts fail to find... commit | commitdiff | tree | snapshot
2013-01-24 Bo LiAdded user-friendly error messages if users forget... commit | commitdiff | tree | snapshot
2013-01-08 Bo LiFixed a bug in 'EBSeq/rsem-for-ebseq-generate-ngvector... commit | commitdiff | tree | snapshot
2013-01-07 Bo LiModified rsem-find-DE commit | commitdiff | tree | snapshot
2013-01-07 Bo LiUpdated EBSeq to v1.1.5 commit | commitdiff | tree | snapshot
2012-11-30 Bo Li- Added poly(A) tails to 'reference_name.transcripts... commit | commitdiff | tree | snapshot
2012-10-21 Bo LiUpdated EBSeq to v1.1.4 commit | commitdiff | tree | snapshot
2012-10-18 Bo LiAdded --version option for rsem-calculate-expression commit | commitdiff | tree | snapshot
2012-10-10 Bo Liuse if/elsif to replace switch in rsem-calculate-expression commit | commitdiff | tree | snapshot
2012-09-24 Bo LiFixed a bug to make RSEM generated BAM file valid input... commit | commitdiff | tree | snapshot
2012-09-15 Bo LiIf a gene is not expressed, its length/effective length... commit | commitdiff | tree | snapshot
2012-09-11 Bo LiREADME.md is changed commit | commitdiff | tree | snapshot
2012-09-11 Bo LiAdded a script, 'rsem-find-DE', to run EBSeq automatically commit | commitdiff | tree | snapshot
2012-09-10 Bo Lichanged output format to contain FPKM etc. ; fixed... commit | commitdiff | tree | snapshot
2012-07-27 Bo LiAdded a user-friendly error message for rsem-sam-validator commit | commitdiff | tree | snapshot
2012-07-23 Bo LiFixed a bug for calling pthread_join commit | commitdiff | tree | snapshot
2012-07-22 Bo LiFixed a bug in perl scripts for printing error messages commit | commitdiff | tree | snapshot
2012-07-15 Bo LiFix a bug on convert-sam-for-rsem for the case that... commit | commitdiff | tree | snapshot
2012-07-02 Bo Lirsem v1.1.21 commit | commitdiff | tree | snapshot
2012-06-06 Bo LiTested the codes commit | commitdiff | tree | snapshot
2012-06-05 Bo LiMade the BAM output of RSEM have all information contai... commit | commitdiff | tree | snapshot
2012-04-26 Bo LiIncluded EBSeq for downstream differential expression... commit | commitdiff | tree | snapshot
2012-04-15 Bo LiAdded some instructions on how to visualize transcript... commit | commitdiff | tree | snapshot
2012-04-14 Bo LiFixed a bug related to intermediate output displaying... commit | commitdiff | tree | snapshot
2012-04-14 Bo LiFixed a bug related to intermediate output displaying... commit | commitdiff | tree | snapshot
2012-03-21 Bo LiAllowed > 2^31 hits commit | commitdiff | tree | snapshot
2012-03-11 Bo LiModified makefile to work for gcc version 4.5.3 or... commit | commitdiff | tree | snapshot
2012-03-11 Bo LiModified 'convert-sam-for-rsem' so that this program... commit | commitdiff | tree | snapshot
2012-03-11 Bo LiAdd a validator for input SAM/BAM file commit | commitdiff | tree | snapshot
2012-03-09 Bo LiImproved warning messages in rsem-gen-transcript-plots commit | commitdiff | tree | snapshot
2012-03-09 Bo LiAdd warning messages for detected invalid alignments commit | commitdiff | tree | snapshot
2012-02-27 Colin DeweyAdded .gitignore to ignore build products commit | commitdiff | tree | snapshot
2012-02-27 Colin DeweyModified build rules for sam/libbam.a to enable paralle... commit | commitdiff | tree | snapshot
2012-02-19 Bo Li[Change] Do not add --phred33-qual option if --no-quali... commit | commitdiff | tree | snapshot
2012-02-09 Bo LiThe order of @SQ tags in SAM/BAM files can be arbitrary now commit | commitdiff | tree | snapshot
2012-02-08 Bo Liadd --no-bam-output option to not generate output bam... commit | commitdiff | tree | snapshot
2012-02-08 Bo Liroll back to original version plus fixed a small bug... commit | commitdiff | tree | snapshot
2012-02-08 Bo Lirewrote parallelization of calcCI.cpp commit | commitdiff | tree | snapshot
2012-01-31 Bo Lirsem v1.1.16 commit | commitdiff | tree | snapshot
2012-01-26 Bo Lirsem v1.1.15 commit | commitdiff | tree | snapshot
2012-01-18 Bo Lirsem v1.1.14 commit | commitdiff | tree | snapshot
2011-12-31 Bo Lirelax the requirement about GTF attribute format commit | commitdiff | tree | snapshot
2011-12-14 Bo Limodify one error message and add --bowtie-chunkmbs... commit | commitdiff | tree | snapshot
2011-12-14 Bo LiMerge remote-tracking branch 'origin/master' commit | commitdiff | tree | snapshot
2011-12-14 Bo Lianother change commit | commitdiff | tree | snapshot
2011-12-14 bli25wiscMerge pull request #1 from earonesty/master commit | commitdiff | tree | snapshot
2011-12-14 Erik Aronesty--bowtie-chunkmbs commit | commitdiff | tree | snapshot
2011-12-10 Bo Liupdated some description commit | commitdiff | tree | snapshot
2011-12-10 Bo Linew update commit | commitdiff | tree | snapshot
2011-12-09 Bo Liconvert-sam-for-rsem is updated commit | commitdiff | tree | snapshot
2011-12-09 Bo Liadd a script to convert sam file for non-bowtie aligner commit | commitdiff | tree | snapshot
2011-12-04 Bo Lirsem-v1.1.14b3 commit | commitdiff | tree | snapshot
2011-12-02 Bo Lirsem-1.1.14 with transcript wiggle plot generation commit | commitdiff | tree | snapshot
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Debian packaging of rsem