From e4514d4b79b1d151a63311303c23bb5333a9ac8d Mon Sep 17 00:00:00 2001 From: Bo Li Date: Tue, 19 Apr 2011 13:33:50 -0500 Subject: [PATCH] some changes --- EM.cpp | 4 ++-- makefile | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/EM.cpp b/EM.cpp index ff25768..08fc8c7 100644 --- a/EM.cpp +++ b/EM.cpp @@ -633,8 +633,8 @@ int main(int argc, char* argv[]) { printf("Usage : rsem-run-em refName read_type sampleName sampleToken [-p #Threads] [-b samInpType samInpF has_fn_list_? [fn_list]] [-q] [--gibbs-out]\n\n"); printf(" refName: reference name\n"); printf(" read_type: 0 single read without quality score; 1 single read with quality score; 2 paired-end read without quality score; 3 paired-end read with quality score.\n"); - printf(" samplePath: sample path.\n"); - printf(" sampleName: sample name.\n"); + printf(" sampleName: sample's name, including the path\n"); + printf(" sampleToken: sampleName excludes the path\n"); printf(" -p: number of threads which user wants to use. (default: 1)\n"); printf(" -b: produce bam format output file. (default: off)\n"); printf(" -q: set it quiet\n"); diff --git a/makefile b/makefile index 12fc9d6..7609459 100644 --- a/makefile +++ b/makefile @@ -102,7 +102,7 @@ rsem-calculate-credibility-intervals : calcCI.o $(CC) -o rsem-calculate-credibility-intervals calcCI.o #some header files are omitted -calcCI.o : utils.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h RefSeq.h RefSeqPolicy.h PolyARules.h Refs.h GroupInfo.h calcCI.cpp +calcCI.o : utils.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h RefSeq.h RefSeqPolicy.h PolyARules.h Refs.h GroupInfo.h calcCI.cpp boost/random.hpp $(CC) $(COFLAGS) calcCI.cpp clean: -- 2.39.2