From 49deb7291ab1a35a319bdc68a4d4d708ec6f011c Mon Sep 17 00:00:00 2001 From: Bo Li Date: Wed, 25 Sep 2013 13:10:40 -0500 Subject: [PATCH] Added a line in WHAT_IS_NEW for renaming of quality score related options in 'rsem-calculate-expression' --- WHAT_IS_NEW | 1 + 1 file changed, 1 insertion(+) diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW index bf8407a..09f4dd9 100644 --- a/WHAT_IS_NEW +++ b/WHAT_IS_NEW @@ -2,6 +2,7 @@ RSEM v1.2.7 - 'rsem-find-DE' is replaced by 'rsem-run-ebseq' and 'rsem-control-fdr' for a more friendly user experience - Added support for differential expression testing on more than 2 conditions in RSEM's EBSeq wrappers 'rsem-run-ebseq' and 'rsem-control-fdr' +- Renamed '--phred33-quals', '--phred64-quals', and '--solexa-quals' in 'rsem-calculate-expression' to '--bowtie-phred33-quals', '--bowtie-phred64-quals', and '--bowtie-solex-quals' to avoid confusion -------------------------------------------------------------------------------------------- -- 2.39.2