From 029284bf74305b5540970f858d7194d05aac501b Mon Sep 17 00:00:00 2001 From: Bo Li Date: Thu, 10 Mar 2011 22:00:40 -0600 Subject: [PATCH] rename plotModel.R to rsem-plot-model --- README.md | 6 +++--- plotModel.R => rsem-plot-model | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) rename plotModel.R => rsem-plot-model (98%) diff --git a/README.md b/README.md index 0c74b6e..b95c4ea 100644 --- a/README.md +++ b/README.md @@ -125,11 +125,11 @@ Refer to the [UCSC custom track help page](http://genome.ucsc.edu/goldenPath/hel #### c) Visualize the model learned by RSEM -RSEM provides an R script, plotModel.R, for visulazing the model learned. +RSEM provides an R script, 'rsem-plot-model', for visulazing the model learned. Usage: - plotModel.R modelF outF + rsem-plot-model modelF outF modelF: the sample_name.model file generated by RSEM outF: the file name for plots generated from the model. It is a pdf file @@ -138,7 +138,7 @@ The plots generated depends on read type and user configuration. It may include fragment length distribution, mate length distribution, read start position distribution (RSPD), quality score vs percentage of sequecing error given the reference base, position vs percentage of -sequencing errro given the reference base. +sequencing error given the reference base. ## Example diff --git a/plotModel.R b/rsem-plot-model similarity index 98% rename from plotModel.R rename to rsem-plot-model index ce0a8dc..aa2c724 100755 --- a/plotModel.R +++ b/rsem-plot-model @@ -2,7 +2,7 @@ argv <- commandArgs(TRUE) if (length(argv) != 2) { - cat("Usage: plotModel.R modelF outF\n") + cat("Usage: rsem-plot-model modelF outF\n") q(status = 1) } -- 2.39.2