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Removed Mac ._* files from repo
[rsem.git] / rsem-calculate-expression
2014-06-06 Bo LiAdded posterior standard deviation of counts as output... blob | commitdiff | raw
2014-06-06 Bo LiAdded --seed option to set random number generator... blob | commitdiff | raw | diff to current
2014-06-05 Bo LiModified RSEM perl scripts so that RSEM directory will... blob | commitdiff | raw | diff to current
2014-04-03 Bo LiUse PATH env to instead the variable blob | commitdiff | raw | diff to current
2014-03-21 Bo LiModified the shebang line for perl scripts blob | commitdiff | raw | diff to current
2014-03-21 Bo LiAdded support for allele-specific expression estimation blob | commitdiff | raw | diff to current
2014-03-09 Bo LiFixed a typo in rsem-calculate-expression's document... blob | commitdiff | raw | diff to current
2014-02-14 Bo LiAdded Bowtie 2 support blob | commitdiff | raw | diff to current
2014-01-11 Bo LiRemoved unnecessary spaces in POD doc of rsem-calculate... blob | commitdiff | raw | diff to current
2013-12-02 Bo LiAdded a file describing the format of sample_name.stat... blob | commitdiff | raw | diff to current
2013-09-02 Bo LiAdded support for DE analysis on multiple conditions... blob | commitdiff | raw | diff to current
2013-08-28 Bo LiRenamed --phred33-quals, --phred64-quals, and --solexa... blob | commitdiff | raw | diff to current
2013-01-27 Bo LiFixed a bug that will lead perl scripts fail to find... blob | commitdiff | raw | diff to current
2013-01-24 Bo LiAdded user-friendly error messages if users forget... blob | commitdiff | raw | diff to current
2012-10-18 Bo LiAdded --version option for rsem-calculate-expression blob | commitdiff | raw | diff to current
2012-10-10 Bo Liuse if/elsif to replace switch in rsem-calculate-expression blob | commitdiff | raw | diff to current
2012-09-10 Bo Lichanged output format to contain FPKM etc. ; fixed... blob | commitdiff | raw | diff to current
2012-07-22 Bo LiFixed a bug in perl scripts for printing error messages blob | commitdiff | raw | diff to current
2012-06-06 Bo LiTested the codes blob | commitdiff | raw | diff to current
2012-06-05 Bo LiMade the BAM output of RSEM have all information contai... blob | commitdiff | raw | diff to current
2012-04-26 Bo LiIncluded EBSeq for downstream differential expression... blob | commitdiff | raw | diff to current
2012-04-15 Bo LiAdded some instructions on how to visualize transcript... blob | commitdiff | raw | diff to current
2012-02-19 Bo Li[Change] Do not add --phred33-qual option if --no-quali... blob | commitdiff | raw | diff to current
2012-02-08 Bo Liadd --no-bam-output option to not generate output bam... blob | commitdiff | raw | diff to current
2012-02-08 Bo Liroll back to original version plus fixed a small bug... blob | commitdiff | raw | diff to current
2012-01-31 Bo Lirsem v1.1.16 blob | commitdiff | raw | diff to current
2011-12-14 Bo Limodify one error message and add --bowtie-chunkmbs... blob | commitdiff | raw | diff to current
2011-12-14 Bo LiMerge remote-tracking branch 'origin/master' blob | commitdiff | raw | diff to current
2011-12-14 bli25wiscMerge pull request #1 from earonesty/master blob | commitdiff | raw | diff to current
2011-12-14 Erik Aronesty--bowtie-chunkmbs blob | commitdiff | raw | diff to current
2011-12-10 Bo Liupdated some description blob | commitdiff | raw | diff to current
2011-12-04 Bo Lirsem-v1.1.14b3 blob | commitdiff | raw | diff to current
2011-12-01 Bo Liadd new files blob | commitdiff | raw | diff to current
2011-11-28 Bo Litested version for tbam2gbam blob | commitdiff | raw | diff to current
2011-11-11 Bo Lisome displaying issue in rsem-calculate-expression... blob | commitdiff | raw | diff to current
2011-11-10 Bo Lirsem v1.1.14, add --sampling-for-bam option, modify... blob | commitdiff | raw | diff to current
2011-11-06 Bo Lirsem v1.1.13, speed up EM by only updating model parame... blob | commitdiff | raw | diff to current
2011-10-19 Bo Lirsem v1.1.12, add a script to extract transcript-to... blob | commitdiff | raw | diff to current
2011-07-26 Bo LiMAPQ changed blob | commitdiff | raw | diff to current
2011-05-24 Bo Lirsem-plot-model updated blob | commitdiff | raw | diff to current
2011-04-25 Bo Liadd feature that jump lines with # in gtf blob | commitdiff | raw | diff to current
2011-04-25 Bo Liback to single thread Gibbs blob | commitdiff | raw | diff to current
2011-04-25 Bo LiVersion with Gibbs parallelized blob | commitdiff | raw | diff to current
2011-04-18 Bo LiRSEM v1.1.8 blob | commitdiff | raw | diff to current
2011-04-17 Bo Lilots of changes blob | commitdiff | raw | diff to current
2011-03-17 Bo LiFixed bugs in the Gibbs sampler. Fixed a bug which... blob | commitdiff | raw | diff to current
2011-03-09 Bo LiFixed a bug related to output format. Grant read permes... blob | commitdiff | raw | diff to current
2011-02-17 Bo Liv1.1.2 blob | commitdiff | raw | diff to current
2011-02-17 Bo LiNormalized Read Fraction(nrf) are eliminated from outpu... blob | commitdiff | raw | diff to current
2011-02-11 Bo LiBugs in SingleModel.h are fixed. blob | commitdiff | raw | diff to current
2011-02-09 Bo LiRSEM Source Codes blob | commitdiff | raw | diff to current
Debian packaging of rsem