From: Bo Li <bli@cs.wisc.edu>
Date: Fri, 27 May 2011 18:32:45 +0000 (-0500)
Subject: rsem v1.1.9
X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=commitdiff_plain;h=a7af78eba4c832c3dc7ff8cbabbd7770bbd015cd

rsem v1.1.9
---

diff --git a/LenDist.h b/LenDist.h
index 88366a6..d7b2ba3 100644
--- a/LenDist.h
+++ b/LenDist.h
@@ -177,13 +177,9 @@ void LenDist::setAsNormal(double mean, double sd, int minL, int maxL) {
   trim();
 }
 
-int bo = 0; // need delete
-  
 void LenDist::init() {
 	memset(pdf, 0, sizeof(double) * (span + 1));
 	memset(cdf, 0, sizeof(double) * (span + 1));
-
-	bo = 0;
 }
 
 void LenDist::finish() {
@@ -210,10 +206,6 @@ void LenDist::collect(const LenDist& o) {
 	  cdf = new double[span + 1];
 	  memset(pdf, 0, sizeof(double) * (span + 1));
 	  memset(cdf, 0, sizeof(double) * (span + 1));
-	  
-	  //need delete
-	  ++bo;
-	  assert(bo < 2);
 	}
 	for (int i = 1; i <= span; i++) {
 		pdf[i] += o.pdf[i];
diff --git a/calcCI.cpp b/calcCI.cpp
index c9ccce5..b5a2608 100644
--- a/calcCI.cpp
+++ b/calcCI.cpp
@@ -382,12 +382,14 @@ int main(int argc, char* argv[]) {
 
 	delete[] tau_denoms;
 
+	/*
 	sprintf(command, "rm -f %s", tmpF);
 	int status = system(command);
 	if (status != 0) {
 		fprintf(stderr, "Cannot delete %s!\n", tmpF);
 		exit(-1);
 	}
+	*/
 
 	return 0;
 }