From: Bo Li <bli@cs.wisc.edu>
Date: Wed, 19 Oct 2011 03:35:34 +0000 (-0500)
Subject: rsem v1.1.12 extract-transcript-to-gene-map-from-trinity changed
X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=commitdiff_plain;h=5b867894f164d9fa3fbc1a8e659b34890b977716

rsem v1.1.12 extract-transcript-to-gene-map-from-trinity changed
---

diff --git a/extract-transcript-to-gene-map-from-trinity b/extract-transcript-to-gene-map-from-trinity
index e04e993..260cd83 100755
--- a/extract-transcript-to-gene-map-from-trinity
+++ b/extract-transcript-to-gene-map-from-trinity
@@ -20,9 +20,9 @@ while (substr($tag, 0, 1) eq ">") {
     }
     if ($cnt == 0) { print "Warning: Fasta entry $tag has an empty sequence, it is omitted.\n"; }
     else {
-	my ($tid, $gid) = split(/ /, $tag);
-	my ($comp, $c, @tmp) = split(/_/, $gid);
-	$gid = join("_", $comp, $c);
+	my ($tid, @tmp) = split(/ /, $tag);
+	my ($comp, $c, @tmp) = split(/_/, $tag);
+	my $gid = join("_", $comp, $c);
 	print OUTPUT "$gid\t$tid\n";
     }
     $tag = $line; chomp($tag);