Fixed a bug in 'EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info' which...

diff --git a/EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info b/EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info
index 312dbfa33c77339b530e67362e14e391e75f4259..ccc52f70ad321cca9d71de19eb640978331f550a 100755 (executable)
--- a/EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info
+++ b/EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info
@@ -6,7 +6,7 @@ if (length(argv) != 2) {
   q(status = 1)
 }
 
   q(status = 1)
 }
 

-data <- read.table(file = argv[1], stringsAsFactors = F)
+data <- read.table(file = argv[1], stringsAsFactors = F, sep = "\t")

 idx <- data[,2] >= 0
 kmr <- kmeans(data[idx, 2], 3)
 order <- order(kmr$centers)
 idx <- data[,2] >= 0
 kmr <- kmeans(data[idx, 2], 3)
 order <- order(kmr$centers)

diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW
index 4e1690d3618661b9f3be45a9a36e2d21fad5ed38..64dc6e55768b12dc467e1909b84a964c7dab3d9a 100644 (file)
--- a/WHAT_IS_NEW
+++ b/WHAT_IS_NEW
@@ -1,3 +1,9 @@
+RSEM v1.2.3
+
+- Fixed a bug in 'EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info' which may crash the script
+
+--------------------------------------------------------------------------------------------
+

 RSEM v1.2.2
 
 - Updated EBSeq to v1.1.5
 RSEM v1.2.2
 
 - Updated EBSeq to v1.1.5