}
-inline void general_assert(int expr, const std::string& errmsg, bool putEnter = false) {
- if (expr) return;
+#define general_assert(expr, errmsg) if (!(expr)) general_report((errmsg), false)
+#define general_assert_1(expr, errmsg) if (!(expr)) general_report((errmsg), true)
+inline void general_report(const std::string& errmsg, bool putEnter) {
if (putEnter) printf("\n");
fprintf(stderr, "%s\n", errmsg.c_str());
exit(-1);
}
-inline void pthread_assert(int rc, const std::string& func_name, const std::string& errmsg) {
- if (rc == 0) return;
+#define pthread_assert(rc, func_name, errmsg) if ((rc) != 0) pthread_report((rc), (func_name), (errmsg))
+inline void pthread_report(int rc, const std::string& func_name, const std::string& errmsg) {
fprintf(stderr, "%s\n", errmsg.c_str());
if (func_name == "pthread_create") {
if (isPaired) {
add_to_appropriate_arr(b);
while ((go_on = (samread(in, b) >= 0)) && (qname == bam1_qname(b))) {
- general_assert(b->core.flag & 0x0001, "Read " + qname + " is detected as both single-end and paired-end read!", true);
+ general_assert_1(b->core.flag & 0x0001, "Read " + qname + " is detected as both single-end and paired-end read!");
add_to_appropriate_arr(b);
}
- general_assert(arr_both.size() % 2 == 0, "Number of first and second mates in read " + qname + "'s full alignments (both mates are aligned) are not matched!", true);
- general_assert((arr_partial_1.size() + arr_partial_2.size() + arr_partial_unknown.size()) % 2 == 0, "Number of first and second mates in read " + qname + "'s partial alignments (at most one mate is aligned) are not matched!", true);
+ general_assert_1(arr_both.size() % 2 == 0, "Number of first and second mates in read " + qname + "'s full alignments (both mates are aligned) are not matched!");
+ general_assert_1((arr_partial_1.size() + arr_partial_2.size() + arr_partial_unknown.size()) % 2 == 0, "Number of first and second mates in read " + qname + "'s partial alignments (at most one mate is aligned) are not matched!");
if (!arr_both.empty()) {
sort(arr_both.begin(), arr_both.end(), less_than);