X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=blobdiff_plain;f=parseIt.cpp;fp=parseIt.cpp;h=91a4c141da95323dc58b5a8b45e47cb543fa0a75;hp=3373ef280979428230b74d77439d61bff3a96d47;hb=fea934ddfe218ae83b4421d32a8f6b941f004487;hpb=799735d94b6f8c5c34b828bccdd3408f4b38a6ef

diff --git a/parseIt.cpp b/parseIt.cpp
index 3373ef2..91a4c14 100644
--- a/parseIt.cpp
+++ b/parseIt.cpp
@@ -52,7 +52,7 @@ void init(const char* imdName, char alignFType, const char* alignF) {
 
 	char* aux = 0;
 	if (strcmp(fn_list, "")) aux = fn_list;
-	parser = new SamParser(alignFType, alignF, transcripts, aux);
+	parser = new SamParser(alignFType, alignF, aux, transcripts, imdName);
 
 	memset(cat, 0, sizeof(cat));
 	memset(readOutFs, 0, sizeof(readOutFs));