X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=blobdiff_plain;f=buildReadIndex.cpp;h=7fde02511d7c1083441aaf802149a9d0330db8d6;hp=c9e1deb729c1b948a48a7a6c4e10b48806dfb04e;hb=refs%2Fheads%2Fupstream;hpb=86e650e9577999a7ba00ab454d1f6bf674b0ea70

diff --git a/buildReadIndex.cpp b/buildReadIndex.cpp
index c9e1deb..7fde025 100644
--- a/buildReadIndex.cpp
+++ b/buildReadIndex.cpp
@@ -13,7 +13,7 @@ bool hasQ;
 
 void buildIndex(char* readF, int gap, bool hasQ) {
 	int nPos;
-	long nReads;
+	READ_INT_TYPE nReads;
 	bool success;
 	string line;
 	char idxF[STRLEN];
@@ -53,7 +53,7 @@ void buildIndex(char* readF, int gap, bool hasQ) {
 		}
 		++nReads;
 
-		if (verbose && nReads % 1000000 == 0) { printf("FIN %lld\n", (long long)nReads); }
+		if (verbose && nReads % 1000000 == 0) { cout<< "FIN "<< nReads<< endl; }
 	} while (success);
 
 	fout.seekp(startPos);
@@ -64,7 +64,7 @@ void buildIndex(char* readF, int gap, bool hasQ) {
 	fin.close();
 	fout.close();
 
-	if (verbose) { printf("Build Index %s is Done!\n", readF); }
+	if (verbose) { cout<< "Build Index "<< readF<< " is Done!"<< endl; }
 }
 
 int main(int argc, char* argv[]) {