X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=blobdiff_plain;f=bam2readdepth.cpp;h=87fb178a60ad08c146cb6b23e3979e4237cdd480;hp=c7f0adbcecc96bfaab0a24b5fa4764d27cd2e268;hb=0a534802ee9fa3d488995a68621ff04f0fc6be7f;hpb=229ba9d68e0a801907631887640ab475d51c560c diff --git a/bam2readdepth.cpp b/bam2readdepth.cpp index c7f0adb..87fb178 100644 --- a/bam2readdepth.cpp +++ b/bam2readdepth.cpp @@ -1,13 +1,20 @@ +#include +#include +#include #include + #include "wiggle.h" +using namespace std; + int main(int argc, char* argv[]) { - if (argc != 2) { - printf("Usage: rsem-bam2readdepth sorted_bam_input\n"); - std::exit(1); - } + if (argc != 2) { + printf("Usage: rsem-bam2readdepth sorted_bam_input\n"); + exit(-1); + } + ReadDepthWriter depth_writer(std::cout); build_wiggles(argv[1], depth_writer); - return 0; + return 0; }