X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=blobdiff_plain;f=WHAT_IS_NEW;h=244066c0b5c0617031a2ecd04ae96b1a0437e90f;hp=3c7f654e1080d7ddeb8189bbae43d0554f10413d;hb=1b2999c4407ef8419fb89b66b843b7141caff4da;hpb=6eec553ba4ab1cb1c6f48cd14d9e5c92c7d85798 diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW index 3c7f654..244066c 100644 --- a/WHAT_IS_NEW +++ b/WHAT_IS_NEW @@ -1,7 +1,15 @@ +RSEM v1.1.21 + +- Removed optional field "Z0:A:!" in the BAM outputs +- Added --no-fractional-weight option to rsem-bam2wig, if the BAM file is not generated by RSEM, this option is recommended to be set +- Fixed a bug for generating transcript level wiggle files using 'rsem-plot-transcript-wiggles' + +-------------------------------------------------------------------------------------------- + RSEM v1.1.20 - Added an option to set the temporary folder name -- Removed sample_name.sam.gz. Instead, RSEM uses samtools to convert bowtie outputed SAM file into a BAM file under the temporary folder +- Removed sample_name.sam.gz. Instead, RSEM uses samtools to convert bowtie outputted SAM file into a BAM file under the temporary folder - RSEM generated BAM files now contains all alignment lines produced by bowtie or user-specified aligners, including unalignable reads. Please note that for paired-end reads, if one mate has alignments but the other does not, RSEM will mark the alignable mate as "unmappable" (flag bit 0x4) and append an optional field "Z0:A:!" --------------------------------------------------------------------------------------------