X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=blobdiff_plain;f=SingleQModel.h;h=ba43d9b608c934dd290ff5a9679b7f7d96e9586a;hp=5da47545370bdaf94991d36c50b474270d876bd4;hb=da57529b92adbb7ae74a89861cb39fb35ac7c62d;hpb=9eef8b58056b7cdaad1b4bdb2b2904d9fc0ff430

diff --git a/SingleQModel.h b/SingleQModel.h
index 5da4754..ba43d9b 100644
--- a/SingleQModel.h
+++ b/SingleQModel.h
@@ -9,6 +9,7 @@
 #include<algorithm>
 #include<sstream>
 #include<iostream>
+#include<vector>
 
 #include "utils.h"
 #include "my_assert.h"
@@ -238,12 +239,12 @@ public:
 
 	const LenDist& getGLD() { return *gld; }
 
-	void startSimulation(simul*, double*);
+	void startSimulation(simul*, const std::vector<double>&);
 	bool simulate(READ_INT_TYPE, SingleReadQ&, int&);
 	void finishSimulation();
 
 	//Use it after function 'read' or 'estimateFromReads'
-	double* getMW() { 
+	const double* getMW() { 
 	  assert(mw != NULL);
 	  return mw;
 	}
@@ -405,7 +406,7 @@ void SingleQModel::write(const char* outF) {
 	fclose(fo);
 }
 
-void SingleQModel::startSimulation(simul* sampler, double* theta) {
+void SingleQModel::startSimulation(simul* sampler, const std::vector<double>& theta) {
 	this->sampler = sampler;
 
 	theta_cdf = new double[M + 1];