X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=blobdiff_plain;f=PairedEndQModel.h;h=7aebb494d1dc9c45785185e5ade49d7c2e8b2d1d;hp=a2f798120cc2524cae41b7f156aaa4bad524cced;hb=b64d62d49f9b0446f10f87a2aadcde2f36854ab6;hpb=9eef8b58056b7cdaad1b4bdb2b2904d9fc0ff430

diff --git a/PairedEndQModel.h b/PairedEndQModel.h
index a2f7981..7aebb49 100644
--- a/PairedEndQModel.h
+++ b/PairedEndQModel.h
@@ -9,6 +9,7 @@
 #include<algorithm>
 #include<sstream>
 #include<iostream>
+#include<vector>
 
 #include "utils.h"
 #include "my_assert.h"
@@ -197,12 +198,12 @@ public:
 
 	const LenDist& getGLD() { return *gld; }
 
-	void startSimulation(simul*, double*);
+	void startSimulation(simul*, const std::vector<double>&);
 	bool simulate(READ_INT_TYPE, PairedEndReadQ&, int&);
 	void finishSimulation();
 
 	//Use it after function 'read' or 'estimateFromReads'
-	double* getMW() { 
+	const double* getMW() { 
 	  assert(mw != NULL);
 	  return mw;
 	}
@@ -361,7 +362,7 @@ void PairedEndQModel::write(const char* outF) {
 	fclose(fo);
 }
 
-void PairedEndQModel::startSimulation(simul* sampler, double* theta) {
+void PairedEndQModel::startSimulation(simul* sampler, const std::vector<double>& theta) {
 	this->sampler = sampler;
 
 	theta_cdf = new double[M + 1];