X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=blobdiff_plain;f=BamWriter.h;h=2a325d6cb46901760ef1cebe01b5cbbba1136ee7;hp=a4e7dc523a3cb8f0acbf3d903dd021142df64eab;hb=412c1a2821c5a4cbe2e68e4e9f4e2026a86d25f7;hpb=a1dc3c6c442d288c7f4218cbb8b7a54f08e9d980

diff --git a/BamWriter.h b/BamWriter.h
index a4e7dc5..2a325d6 100644
--- a/BamWriter.h
+++ b/BamWriter.h
@@ -106,7 +106,7 @@ void BamWriter::work(HitWrapper<PairedEndHit> wrapper) {
 	bam1_t *b, *b2;
 	PairedEndHit *hit;
 
-	int cnt = 0;
+	HIT_INT_TYPE cnt = 0;
 
 	b = bam_init1();
 	b2 = bam_init1();