X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=blobdiff_plain;f=BamConverter.h;h=bd81127d5fcb4728ad4e43efd9a0d9f723e4f78f;hp=af984ac4968c24a6a0c297154374bdaa32dbcd9e;hb=9eef8b58056b7cdaad1b4bdb2b2904d9fc0ff430;hpb=f67ec16ff8add74c17df026f77cf39e5a1aca051

diff --git a/BamConverter.h b/BamConverter.h
index af984ac..bd81127 100644
--- a/BamConverter.h
+++ b/BamConverter.h
@@ -76,7 +76,7 @@ void BamConverter::process() {
 	std::string cqname;
 	bool isPaired = false;
 
-	int cnt = 0;
+	HIT_INT_TYPE cnt = 0;
 
 	cqname = "";
 	b = bam_init1(); b2 = bam_init1();