*.o *.a *~ rsem-bam2readdepth rsem-bam2wig rsem-build-read-index rsem-calculate-credibility-intervals rsem-extract-reference-transcripts rsem-get-unique rsem-parse-alignments rsem-preref rsem-run-em rsem-run-gibbs rsem-simulate-reads rsem-synthesis-reference-transcripts rsem-tbam2gbam rsem-sam-validator rsem-scan-for-paired-end-reads EBSeq/rsem-for-ebseq-calculate-clustering-info sam/samtools