From 992b1f468dea5d812cb8fa355ac4d6707362f34a Mon Sep 17 00:00:00 2001 From: Don Armstrong Date: Wed, 21 Feb 2018 20:17:13 -0800 Subject: [PATCH] update skills --- don_armstrong_resume.org | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/don_armstrong_resume.org b/don_armstrong_resume.org index 6c608cc..57c9f5e 100644 --- a/don_armstrong_resume.org +++ b/don_armstrong_resume.org @@ -65,24 +65,24 @@ * Skills ** Genomics and Epigenomics -+ *NGS* and array-based Genomics and Epigenomics of complex human - diseases using *RNA-seq*, targeted DNA sequencing, *RRBS*, Illumina ++ NGS and array-based Genomics and Epigenomics of complex human + diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina bead arrays, and Affymetrix microarrays from sample collection to publication. + Reproducible, scalable bioinformatics analysis using make, - *nextflow*, and *cwl* based workflows on cloud- and cluster-based + nextflow, and cwl based workflows on cloud- and cluster-based systems on terabyte-scale datasets + Alignment, annotation, and variant calling using existing and custom - software, including *GATK*, *bwa*, *STAR*, and *kallisto*. + software, including GATK, bwa, STAR, and kallisto. + Correcting for and experimental design to overcome multiple testing, confounders, and batch effects using Bayesian and frequentist methods approaches -# + Using evolutionary genomics to identify causal human variants ++ Using evolutionary genomics to identify causal human variants ** Statistics + Statistical modeling (regression, inference, prediction, and learning in very large (> 1TB) datasets) + Addressing confounders and batch effects -# + Reproducible research ++ Reproducible research ** Big Data + Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure) + Inter-process communication: MPI, OpenMP -- 2.39.2