* Skills
** Genomics and Epigenomics
-+ *NGS* and array-based Genomics and Epigenomics of complex human
- diseases using *RNA-seq*, targeted DNA sequencing, *RRBS*, Illumina
++ NGS and array-based Genomics and Epigenomics of complex human
+ diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina
bead arrays, and Affymetrix microarrays from sample collection to
publication.
+ Reproducible, scalable bioinformatics analysis using make,
- *nextflow*, and *cwl* based workflows on cloud- and cluster-based
+ nextflow, and cwl based workflows on cloud- and cluster-based
systems on terabyte-scale datasets
+ Alignment, annotation, and variant calling using existing and custom
- software, including *GATK*, *bwa*, *STAR*, and *kallisto*.
+ software, including GATK, bwa, STAR, and kallisto.
+ Correcting for and experimental design to overcome multiple
testing, confounders, and batch effects using Bayesian and
frequentist methods approaches
-# + Using evolutionary genomics to identify causal human variants
++ Using evolutionary genomics to identify causal human variants
** Statistics
+ Statistical modeling (regression, inference, prediction, and
learning in very large (> 1TB) datasets)
+ Addressing confounders and batch effects
-# + Reproducible research
++ Reproducible research
** Big Data
+ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
+ Inter-process communication: MPI, OpenMP