org-ref.git
4 years agosmall layout changes, fixed bug in bibliographystyle link
John Kitchin [Wed, 25 Mar 2015 14:32:16 +0000 (10:32 -0400)]
small layout changes, fixed bug in bibliographystyle link

4 years agomake no output for bibliography style
John Kitchin [Wed, 25 Mar 2015 13:49:11 +0000 (09:49 -0400)]
make no output for bibliography style

4 years agoMerge branch 'master' of github.com:jkitchin/org-ref
John Kitchin [Wed, 25 Mar 2015 13:31:42 +0000 (09:31 -0400)]
Merge branch 'master' of github.com:jkitchin/org-ref

4 years agomake f F in hydra to avoid conflict
John Kitchin [Wed, 25 Mar 2015 13:31:38 +0000 (09:31 -0400)]
make f F in hydra to avoid conflict

4 years agoMerge pull request #26 from syohex/remove-deprecated-function
John Kitchin [Wed, 25 Mar 2015 12:53:08 +0000 (08:53 -0400)]
Merge pull request #26 from syohex/remove-deprecated-function

Use read-string instead of read-input

4 years agoUse read-string instead of read-input
Syohei YOSHIDA [Wed, 25 Mar 2015 01:45:05 +0000 (10:45 +0900)]
Use read-string instead of read-input

Because read-input is a deprecated function.

4 years agochange f to F for file funcs. f was already used in getting a formatted entry.
John Kitchin [Sun, 22 Mar 2015 22:32:54 +0000 (18:32 -0400)]
change f to F for file funcs. f was already used in getting a formatted entry.

4 years agominor fix to allow insertion of citations at the very beginning of the buffer
John Kitchin [Fri, 20 Mar 2015 20:56:10 +0000 (16:56 -0400)]
minor fix to allow insertion of citations at the very beginning of the buffer

4 years agoremoved some commented out code
John Kitchin [Wed, 18 Mar 2015 00:54:54 +0000 (20:54 -0400)]
removed some commented out code

and moved some trailing end parens

4 years agofix small bug in bibliography link when you click on the bibliography part of the...
John Kitchin [Wed, 18 Mar 2015 00:52:42 +0000 (20:52 -0400)]
fix small bug in bibliography link when you click on the bibliography part of the link.

4 years agoanother minor tweak of cite express regexp
John Kitchin [Tue, 17 Mar 2015 23:29:12 +0000 (19:29 -0400)]
another minor tweak of cite express regexp

I found an odd key with / in it. that is covered now.

4 years agofix issue #24
John Kitchin [Tue, 17 Mar 2015 23:27:45 +0000 (19:27 -0400)]
fix issue #24

https://github.com/jkitchin/org-ref/issues/24
I put a save-restriction/widen wrapper around the link message to make sure it can find the bibfile, or other information it needs.

4 years agocheckdoc round 2
John Kitchin [Tue, 17 Mar 2015 23:08:24 +0000 (19:08 -0400)]
checkdoc round 2

4 years agoa round of checkdoc fixing
John Kitchin [Tue, 17 Mar 2015 22:55:05 +0000 (18:55 -0400)]
a round of checkdoc fixing

4 years agofix two other ,* typos
John Kitchin [Tue, 17 Mar 2015 22:48:55 +0000 (18:48 -0400)]
fix two other ,* typos

4 years agofix typo in wiley-pdf
John Kitchin [Tue, 17 Mar 2015 22:48:05 +0000 (18:48 -0400)]
fix typo in wiley-pdf

left over comma from org-block escaping an *.

4 years agoshortened description
John Kitchin [Tue, 17 Mar 2015 22:45:00 +0000 (18:45 -0400)]
shortened description

got rid of lexical variable at the top. I don't think I need it, it was inserted by auto-insert. moved Package-requires up with rest of package info.

4 years agofix issue 23
John Kitchin [Tue, 17 Mar 2015 20:41:47 +0000 (16:41 -0400)]
fix issue 23

4 years agoadjusted cite link re to fix issue #23
John Kitchin [Tue, 17 Mar 2015 19:47:02 +0000 (15:47 -0400)]
adjusted cite link re to fix issue #23

https://github.com/jkitchin/org-ref/issues/23

4 years agoadd new function to find bad file links, bad \attachfile{} and attachfile links
John Kitchin [Mon, 16 Mar 2015 20:27:37 +0000 (16:27 -0400)]
add new function to find bad file links, bad \attachfile{} and attachfile links

for the org-ref command.

4 years agoupdate contents
John Kitchin [Mon, 16 Mar 2015 12:48:31 +0000 (08:48 -0400)]
update contents

4 years agoadd wos documentation
John Kitchin [Mon, 16 Mar 2015 12:48:19 +0000 (08:48 -0400)]
add wos documentation

4 years agorename wos link to wos-search
John Kitchin [Mon, 16 Mar 2015 12:47:38 +0000 (08:47 -0400)]
rename wos link to wos-search

4 years agoInitial commit of wos.el
John Kitchin [Mon, 16 Mar 2015 12:42:23 +0000 (08:42 -0400)]
Initial commit of wos.el

4 years agoadd doc about new doi link.
John Kitchin [Mon, 16 Mar 2015 12:38:11 +0000 (08:38 -0400)]
add doc about new doi link.

4 years agosmall space change.
John Kitchin [Mon, 16 Mar 2015 02:17:32 +0000 (22:17 -0400)]
small space change.

4 years agoignore a few tex files.
John Kitchin [Mon, 16 Mar 2015 02:17:17 +0000 (22:17 -0400)]
ignore a few tex files.

4 years agoadded some export functions to get a pdf and html version of the doc.
John Kitchin [Mon, 16 Mar 2015 02:16:50 +0000 (22:16 -0400)]
added some export functions to get a pdf and html version of the doc.

4 years agodowncase all field names.
John Kitchin [Mon, 16 Mar 2015 02:04:41 +0000 (22:04 -0400)]
downcase all field names.

org-ref does not work so well otherwise.

4 years agoadd index entries
John Kitchin [Mon, 16 Mar 2015 01:38:21 +0000 (21:38 -0400)]
add index entries

expand glossary description.

4 years agofixing a missing paren typo
John Kitchin [Mon, 16 Mar 2015 00:21:32 +0000 (20:21 -0400)]
fixing a missing paren typo

I am not sure how this got introduced.

4 years agoadd index and glossary docs.
John Kitchin [Mon, 16 Mar 2015 00:04:12 +0000 (20:04 -0400)]
add index and glossary docs.

4 years agocheckdoc.
John Kitchin [Mon, 16 Mar 2015 00:03:29 +0000 (20:03 -0400)]
checkdoc.

Also removed lentic from this.

4 years agowhitespace fixing
John Kitchin [Sun, 15 Mar 2015 23:54:56 +0000 (19:54 -0400)]
whitespace fixing

4 years agofixed a tricky bug in finding labels
John Kitchin [Sun, 15 Mar 2015 23:51:42 +0000 (19:51 -0400)]
fixed a tricky bug in finding labels

I found that some #+label:s were getting double counted as org #+label and table names. this set of fixes resolves that. There was a tricky need to save match data while testing the element at point.

4 years agoRevert "remove an apparent duplicate label finder."
John Kitchin [Sun, 15 Mar 2015 23:10:14 +0000 (19:10 -0400)]
Revert "remove an apparent duplicate label finder."

This reverts commit 23bd30bb43dddb264021b31e7c23d1fac70fb097.

i thing it was not duplicate after all.

4 years agoremove an apparent duplicate label finder.
John Kitchin [Sun, 15 Mar 2015 23:07:50 +0000 (19:07 -0400)]
remove an apparent duplicate label finder.

4 years agoadd more docs
John Kitchin [Sun, 15 Mar 2015 22:36:59 +0000 (18:36 -0400)]
add more docs

4 years agorestore store link to custom id
John Kitchin [Sun, 15 Mar 2015 22:36:29 +0000 (18:36 -0400)]
restore store link to custom id

4 years agomore documentation
John Kitchin [Sun, 15 Mar 2015 22:24:07 +0000 (18:24 -0400)]
more documentation

4 years agoadd bibliographystyle completion
John Kitchin [Sun, 15 Mar 2015 22:23:45 +0000 (18:23 -0400)]
add bibliographystyle completion

4 years agoupdate installation
John Kitchin [Sun, 15 Mar 2015 21:34:11 +0000 (17:34 -0400)]
update installation

4 years agoadd new entries
John Kitchin [Sun, 15 Mar 2015 20:59:15 +0000 (16:59 -0400)]
add new entries

4 years agoignore some files
John Kitchin [Sun, 15 Mar 2015 20:59:03 +0000 (16:59 -0400)]
ignore some files

4 years agostill adding documentation
John Kitchin [Sun, 15 Mar 2015 20:57:58 +0000 (16:57 -0400)]
still adding documentation

4 years agoadd additional documentation.
John Kitchin [Sun, 15 Mar 2015 19:57:56 +0000 (15:57 -0400)]
add additional documentation.

4 years agoignore html
John Kitchin [Sun, 15 Mar 2015 19:34:54 +0000 (15:34 -0400)]
ignore html

4 years agoinitial commits of new documentation
John Kitchin [Sun, 15 Mar 2015 19:34:36 +0000 (15:34 -0400)]
initial commits of new documentation

4 years agoslight modification of re link regexp to include eqref
John Kitchin [Sun, 15 Mar 2015 18:43:28 +0000 (14:43 -0400)]
slight modification of re link regexp to include eqref

4 years agoadd a menu for org-ref to the Org menu
John Kitchin [Sun, 15 Mar 2015 17:47:43 +0000 (13:47 -0400)]
add a menu for org-ref to the Org menu

4 years agoadd a help function
John Kitchin [Sun, 15 Mar 2015 17:27:52 +0000 (13:27 -0400)]
add a help function

4 years agorm tangled make command
John Kitchin [Sun, 15 Mar 2015 16:09:05 +0000 (12:09 -0400)]
rm tangled make command

we are all elisp now.

4 years agoran checkdoc and fixed most errors.
John Kitchin [Sun, 15 Mar 2015 16:04:53 +0000 (12:04 -0400)]
ran checkdoc and fixed most errors.

4 years agoignore some files so git status is clean.
John Kitchin [Sun, 15 Mar 2015 15:41:33 +0000 (11:41 -0400)]
ignore some files so git status is clean.

4 years agoadd org require to package
John Kitchin [Sun, 15 Mar 2015 15:39:55 +0000 (11:39 -0400)]
add org require to package

4 years agoadd hydra require
John Kitchin [Sun, 15 Mar 2015 15:38:39 +0000 (11:38 -0400)]
add hydra require

4 years agoremoving the org source version.
John Kitchin [Sun, 15 Mar 2015 15:34:10 +0000 (11:34 -0400)]
removing the org source version.
I am moving towards an all elisp package.

4 years agobump to v0.2
John Kitchin [Sun, 15 Mar 2015 15:33:46 +0000 (11:33 -0400)]
bump to v0.2

4 years agoremove tangling instructions.
John Kitchin [Sun, 15 Mar 2015 15:32:43 +0000 (11:32 -0400)]
remove tangling instructions.

org-ref will be an all elisp package now

4 years agoinitial commit of el version of org-ref
John Kitchin [Sun, 15 Mar 2015 15:30:47 +0000 (11:30 -0400)]
initial commit of el version of org-ref

4 years agostop ignoring el files
John Kitchin [Sun, 15 Mar 2015 15:29:16 +0000 (11:29 -0400)]
stop ignoring el files

4 years agoupdated my customized helm-bibtex formatter
John Kitchin [Sat, 14 Mar 2015 22:03:23 +0000 (18:03 -0400)]
updated my customized helm-bibtex formatter

helm-bibtex changed its interface. this seems to work with a new helm-bibtex.

4 years agoinitial commit of scientific id library
John Kitchin [Sat, 14 Mar 2015 15:52:18 +0000 (11:52 -0400)]
initial commit of scientific id library

4 years agoadd new nonascii '
John Kitchin [Sat, 14 Mar 2015 15:06:51 +0000 (11:06 -0400)]
add new nonascii '

4 years agonew version for org-ref
John Kitchin [Sat, 14 Mar 2015 14:57:36 +0000 (10:57 -0400)]
new version for org-ref

4 years agorm pubmed.org from ORG_SOURCES and add to EL_SOURCES
John Kitchin [Fri, 13 Mar 2015 18:13:52 +0000 (14:13 -0400)]
rm pubmed.org from ORG_SOURCES and add to EL_SOURCES

4 years agoadd isbn and doi-utils to EL_SOURCES
John Kitchin [Fri, 13 Mar 2015 18:12:53 +0000 (14:12 -0400)]
add isbn and doi-utils to EL_SOURCES

4 years agorm doi-utils.org as a source
John Kitchin [Fri, 13 Mar 2015 18:12:22 +0000 (14:12 -0400)]
rm doi-utils.org as a source

it is plain elisp now.

4 years agoignore orig org files
John Kitchin [Fri, 13 Mar 2015 16:42:58 +0000 (12:42 -0400)]
ignore orig org files

4 years agoremove from git repo. replacing with .el
John Kitchin [Fri, 13 Mar 2015 16:42:36 +0000 (12:42 -0400)]
remove from git repo. replacing with .el

4 years agoinitial commit of the isbn module
John Kitchin [Fri, 13 Mar 2015 16:39:37 +0000 (12:39 -0400)]
initial commit of the isbn module

4 years agoMerge pull request #21 from divinenephron/org-src-indentation
John Kitchin [Fri, 13 Mar 2015 16:06:59 +0000 (12:06 -0400)]
Merge pull request #21 from divinenephron/org-src-indentation

Set org-edit-src-content-indentation in org files.

4 years agoSet org-edit-src-content-indentation in org files.
Devon Buchanan [Fri, 13 Mar 2015 15:32:39 +0000 (15:32 +0000)]
Set org-edit-src-content-indentation in org files.

4 years agodelete org-file. ignore .projectile.
John Kitchin [Fri, 13 Mar 2015 00:40:23 +0000 (20:40 -0400)]
delete org-file. ignore .projectile.

4 years agoinitial conversion of pubmed.org to pubmed.el
John Kitchin [Fri, 13 Mar 2015 00:39:15 +0000 (20:39 -0400)]
initial conversion of pubmed.org to pubmed.el

with outshine nav.

4 years agomake hydra code a single section
John Kitchin [Wed, 11 Mar 2015 13:18:30 +0000 (09:18 -0400)]
make hydra code a single section

4 years agoadd outshine comments
John Kitchin [Wed, 11 Mar 2015 13:17:27 +0000 (09:17 -0400)]
add outshine comments

4 years agofix space issue in sorting keys
John Kitchin [Mon, 9 Mar 2015 20:11:30 +0000 (16:11 -0400)]
fix space issue in sorting keys

4 years agodelete example line
John Kitchin [Mon, 9 Mar 2015 18:59:43 +0000 (14:59 -0400)]
delete example line

4 years agoadd get pdf support
John Kitchin [Mon, 9 Mar 2015 18:59:26 +0000 (14:59 -0400)]
add get pdf support

4 years agofix typo in capitalized command.
John Kitchin [Mon, 9 Mar 2015 18:39:00 +0000 (14:39 -0400)]
fix typo in capitalized command.

4 years agocreate arxiv functions for getting a bibtex entry from arxiv.
John Kitchin [Mon, 9 Mar 2015 00:11:40 +0000 (20:11 -0400)]
create arxiv functions for getting a bibtex entry from arxiv.

4 years agoadded an arxiv example
John Kitchin [Mon, 9 Mar 2015 00:10:29 +0000 (20:10 -0400)]
added an arxiv example

4 years agofix conflicting letter in hydra
John Kitchin [Fri, 6 Mar 2015 21:45:21 +0000 (16:45 -0500)]
fix conflicting letter in hydra

4 years agocleaning up documentation
John Kitchin [Fri, 6 Mar 2015 16:21:02 +0000 (11:21 -0500)]
cleaning up documentation

4 years agoadd license at top
John Kitchin [Fri, 6 Mar 2015 16:17:16 +0000 (11:17 -0500)]
add license at top

4 years agoinitial commit of functions to convert bibliographies to bibtex
John Kitchin [Thu, 5 Mar 2015 02:03:57 +0000 (21:03 -0500)]
initial commit of functions to convert bibliographies to bibtex

4 years agoadd debug doi function
John Kitchin [Thu, 5 Mar 2015 01:33:21 +0000 (20:33 -0500)]
add debug doi function

4 years agochange a key in hydra, add update field from doi.
John Kitchin [Thu, 5 Mar 2015 00:30:52 +0000 (19:30 -0500)]
change a key in hydra, add update field from doi.

4 years agoadd update field from doi option.
John Kitchin [Wed, 4 Mar 2015 20:04:29 +0000 (15:04 -0500)]
add update field from doi option.

4 years agoadd date added to the entry
John Kitchin [Wed, 4 Mar 2015 17:15:31 +0000 (12:15 -0500)]
add date added to the entry

4 years agofix typo
John Kitchin [Wed, 4 Mar 2015 17:05:06 +0000 (12:05 -0500)]
fix typo

4 years agoremove interactive from functions that do not need it
John Kitchin [Wed, 4 Mar 2015 17:02:45 +0000 (12:02 -0500)]
remove interactive from functions that do not need it

refine autoloads.

4 years agoadd sort entry to hydra
John Kitchin [Wed, 4 Mar 2015 16:59:45 +0000 (11:59 -0500)]
add sort entry to hydra

4 years agoadd helm-bibtex to hydra
John Kitchin [Wed, 4 Mar 2015 16:27:38 +0000 (11:27 -0500)]
add helm-bibtex to hydra

4 years agosave buffer after replacing non-ascii
John Kitchin [Wed, 4 Mar 2015 16:19:50 +0000 (11:19 -0500)]
save buffer after replacing non-ascii

4 years agoadded documentation at top
John Kitchin [Wed, 4 Mar 2015 16:17:32 +0000 (11:17 -0500)]
added documentation at top

- new non-ascii characters
- new bibtex hydra

4 years agomake key-bindings customizable
John Kitchin [Wed, 4 Mar 2015 15:50:18 +0000 (10:50 -0500)]
make key-bindings customizable

4 years agocheckdoc fixes.
John Kitchin [Wed, 4 Mar 2015 15:41:07 +0000 (10:41 -0500)]
checkdoc fixes.

4 years agoadd tangle blocks for new helm-bibtex features
John Kitchin [Wed, 4 Mar 2015 14:06:39 +0000 (09:06 -0500)]
add tangle blocks for new helm-bibtex features

adding keywords, fixing some bugs in helm-bibtex