org-ref.git
4 years agobeginning of colorize links
John Kitchin [Tue, 3 Feb 2015 01:18:53 +0000 (20:18 -0500)]
beginning of colorize links

regexp to find my links not quite working yet.

4 years agoremove \n from query. this seems to cause trouble in helm.
John Kitchin [Mon, 2 Feb 2015 14:14:41 +0000 (09:14 -0500)]
remove \n from query. this seems to cause trouble in helm.

4 years agofix bug in missing bibtex file arg
John Kitchin [Mon, 2 Feb 2015 14:02:01 +0000 (09:02 -0500)]
fix bug in missing bibtex file arg

4 years agopolished isbn function
John Kitchin [Sat, 31 Jan 2015 20:47:29 +0000 (15:47 -0500)]
polished isbn function

4 years agoadd documentation
John Kitchin [Sat, 31 Jan 2015 20:23:33 +0000 (15:23 -0500)]
add documentation

4 years agoadd isbn to bibtex and fix several substring typos
John Kitchin [Sat, 31 Jan 2015 20:21:50 +0000 (15:21 -0500)]
add isbn to bibtex and fix several substring typos

4 years agoadd isbn function
John Kitchin [Sat, 31 Jan 2015 18:43:35 +0000 (13:43 -0500)]
add isbn function

4 years agopolish the crossref function.
John Kitchin [Sat, 31 Jan 2015 17:44:28 +0000 (12:44 -0500)]
polish the crossref function.

use citation string for crossref query

4 years agofinished version of function to query crossref
John Kitchin [Sat, 31 Jan 2015 17:31:44 +0000 (12:31 -0500)]
finished version of function to query crossref

4 years agopolishing add function
John Kitchin [Sat, 31 Jan 2015 14:20:22 +0000 (09:20 -0500)]
polishing add function

4 years agoremove doi add from region command.
John Kitchin [Sat, 31 Jan 2015 14:16:12 +0000 (09:16 -0500)]
remove doi add from region command.

the functionality is now in the doi-utils-add-bibtex-entry-from-doi command.

4 years agocomment out the tangle for this script
John Kitchin [Fri, 30 Jan 2015 20:30:53 +0000 (15:30 -0500)]
comment out the tangle for this script

I do not use it anymore, and I do not remember how to get the pckl file of the cookie.

4 years agotry making it more robust to open doi in browser if we cannot get json metadata.
John Kitchin [Fri, 30 Jan 2015 16:38:26 +0000 (11:38 -0500)]
try making it more robust to open doi in browser if we cannot get json metadata.

4 years agopolish order of operations
John Kitchin [Fri, 30 Jan 2015 15:06:26 +0000 (10:06 -0500)]
polish order of operations

4 years agopolish link timer code.
John Kitchin [Fri, 30 Jan 2015 15:05:34 +0000 (10:05 -0500)]
polish link timer code.

avoid starting multiple timers

4 years agopolish timer logic for mouse messages
John Kitchin [Fri, 30 Jan 2015 15:02:14 +0000 (10:02 -0500)]
polish timer logic for mouse messages

avoid starting timer more than once.

4 years agomoved cursor messages to its own section. added mouse messages.
John Kitchin [Fri, 30 Jan 2015 14:55:00 +0000 (09:55 -0500)]
moved cursor messages to its own section. added mouse messages.

4 years agofix typo
John Kitchin [Wed, 28 Jan 2015 22:06:20 +0000 (17:06 -0500)]
fix typo

4 years agoadd markdown export with pandoc citations
John Kitchin [Wed, 28 Jan 2015 22:02:16 +0000 (17:02 -0500)]
add markdown export with pandoc citations

4 years agofinally added wos code!
John Kitchin [Wed, 28 Jan 2015 18:27:29 +0000 (13:27 -0500)]
finally added wos code!

4 years agoadd with-affiliates to get cite links in caption
John Kitchin [Tue, 27 Jan 2015 13:42:15 +0000 (08:42 -0500)]
add with-affiliates to get cite links in caption

delete commented out function.

4 years agoadd with-affiliates and catch all cite types
John Kitchin [Tue, 27 Jan 2015 13:37:13 +0000 (08:37 -0500)]
add with-affiliates and catch all cite types

4 years agoadd with-affiliates to get bibtex keys
John Kitchin [Tue, 27 Jan 2015 13:28:02 +0000 (08:28 -0500)]
add with-affiliates to get bibtex keys

so we find them in captions.

4 years agospace change
John Kitchin [Tue, 27 Jan 2015 01:55:55 +0000 (20:55 -0500)]
space change

4 years agofixed add cite insert
John Kitchin [Tue, 27 Jan 2015 01:55:39 +0000 (20:55 -0500)]
fixed add cite insert

4 years agotune latex label regexp.
John Kitchin [Tue, 27 Jan 2015 01:31:04 +0000 (20:31 -0500)]
tune latex label regexp.

remove word boundary.

4 years agoclean up doc strings
John Kitchin [Tue, 27 Jan 2015 01:06:19 +0000 (20:06 -0500)]
clean up doc strings

4 years agofix bug in get labels.
John Kitchin [Tue, 27 Jan 2015 01:01:42 +0000 (20:01 -0500)]
fix bug in get labels.

4 years agofix label click action for occurence plurality
John Kitchin [Tue, 27 Jan 2015 00:36:30 +0000 (19:36 -0500)]
fix label click action for occurence plurality

4 years agomake custom-id links have a message.
John Kitchin [Mon, 26 Jan 2015 22:14:53 +0000 (17:14 -0500)]
make custom-id links have a message.

4 years agoremove custom_id. we cannot ref these.
John Kitchin [Mon, 26 Jan 2015 22:08:54 +0000 (17:08 -0500)]
remove custom_id. we cannot ref these.

4 years agofix issue in bibliography link message
John Kitchin [Mon, 26 Jan 2015 22:08:09 +0000 (17:08 -0500)]
fix issue in bibliography link message

4 years agofix bug in bibliography message
John Kitchin [Mon, 26 Jan 2015 21:53:29 +0000 (16:53 -0500)]
fix bug in bibliography message

4 years agofix insert label to replace if needed
John Kitchin [Mon, 26 Jan 2015 21:39:27 +0000 (16:39 -0500)]
fix insert label to replace if needed

4 years agofixed some issues.
John Kitchin [Mon, 26 Jan 2015 21:25:51 +0000 (16:25 -0500)]
fixed some issues.

added prefix keys for helm commands.

4 years agoupdate insert ref so we can replace current link.
John Kitchin [Mon, 26 Jan 2015 21:04:57 +0000 (16:04 -0500)]
update insert ref so we can replace current link.

4 years agomake double prefix replace ref link
John Kitchin [Mon, 26 Jan 2015 20:49:49 +0000 (15:49 -0500)]
make double prefix replace ref link

4 years agoadd tangle to two blocks
John Kitchin [Mon, 26 Jan 2015 20:31:26 +0000 (15:31 -0500)]
add tangle to two blocks

4 years agofix type
John Kitchin [Mon, 26 Jan 2015 20:22:29 +0000 (15:22 -0500)]
fix type

4 years agorm message box
John Kitchin [Mon, 26 Jan 2015 20:13:53 +0000 (15:13 -0500)]
rm message box

4 years agomany helm integration changes
John Kitchin [Mon, 26 Jan 2015 20:10:58 +0000 (15:10 -0500)]
many helm integration changes

4 years agoadd scopus
John Kitchin [Sun, 25 Jan 2015 23:03:31 +0000 (18:03 -0500)]
add scopus

4 years agoremove messageboxes
John Kitchin [Sun, 25 Jan 2015 19:21:57 +0000 (14:21 -0500)]
remove messageboxes

4 years agomake message function only run in org-mode
John Kitchin [Sun, 25 Jan 2015 19:14:52 +0000 (14:14 -0500)]
make message function only run in org-mode

4 years agofix bug in adding to end of cite link
John Kitchin [Sun, 25 Jan 2015 19:02:28 +0000 (14:02 -0500)]
fix bug in adding to end of cite link

4 years agochange link messages to run in an idle timer
John Kitchin [Sun, 25 Jan 2015 18:53:31 +0000 (13:53 -0500)]
change link messages to run in an idle timer

the command hook was causing the selected region to not be highlighted.

4 years agorm ido-completing
John Kitchin [Sun, 25 Jan 2015 18:38:39 +0000 (13:38 -0500)]
rm ido-completing

4 years agoswitch alternative cite selection to helm
John Kitchin [Sun, 25 Jan 2015 18:30:52 +0000 (13:30 -0500)]
switch alternative cite selection to helm

4 years agoget rid of message box.
John Kitchin [Sun, 25 Jan 2015 18:20:19 +0000 (13:20 -0500)]
get rid of message box.

4 years agospace fix
John Kitchin [Sun, 25 Jan 2015 18:16:22 +0000 (13:16 -0500)]
space fix

4 years agotest bib file
John Kitchin [Sun, 25 Jan 2015 17:54:38 +0000 (12:54 -0500)]
test bib file

4 years agoadd message box to check prefix
John Kitchin [Sun, 25 Jan 2015 17:52:40 +0000 (12:52 -0500)]
add message box to check prefix

4 years agowrap in save-excursion
John Kitchin [Sun, 25 Jan 2015 17:40:05 +0000 (12:40 -0500)]
wrap in save-excursion

4 years agoadd eqref to link message
John Kitchin [Sun, 25 Jan 2015 16:47:47 +0000 (11:47 -0500)]
add eqref to link message

4 years agoclean up and add description
John Kitchin [Sun, 25 Jan 2015 16:37:40 +0000 (11:37 -0500)]
clean up and add description

4 years agoadd try to get pdf if you do not have it
John Kitchin [Sun, 25 Jan 2015 16:36:12 +0000 (11:36 -0500)]
add try to get pdf if you do not have it

4 years agotweaks getting minibuffer messages to work
John Kitchin [Sun, 25 Jan 2015 15:57:17 +0000 (10:57 -0500)]
tweaks getting minibuffer messages to work

4 years agomore changes to get helm working cleanly
John Kitchin [Sun, 25 Jan 2015 15:30:36 +0000 (10:30 -0500)]
more changes to get helm working cleanly

4 years agoremove large output
John Kitchin [Sun, 25 Jan 2015 00:59:58 +0000 (19:59 -0500)]
remove large output

4 years agofix missing )
John Kitchin [Sun, 25 Jan 2015 00:42:28 +0000 (19:42 -0500)]
fix missing )

4 years agoadd function to give message when on a cite link.
John Kitchin [Sun, 25 Jan 2015 00:34:49 +0000 (19:34 -0500)]
add function to give message when on a cite link.

and customization variables to turn it off.

4 years agoadded user functions to helm menu
John Kitchin [Sat, 24 Jan 2015 23:24:22 +0000 (18:24 -0500)]
added user functions to helm menu

4 years agoadded significant new helm integration for cite click.
John Kitchin [Sat, 24 Jan 2015 22:57:39 +0000 (17:57 -0500)]
added significant new helm integration for cite click.

4 years agostart of the helm click menu
John Kitchin [Sat, 24 Jan 2015 19:24:13 +0000 (14:24 -0500)]
start of the helm click menu

4 years agoadded the beginning of an interface to helm-bibtex
John Kitchin [Sat, 24 Jan 2015 19:02:48 +0000 (14:02 -0500)]
added the beginning of an interface to helm-bibtex

4 years agoMerge branch 'adc1b43'
John Kitchin [Sat, 24 Jan 2015 15:28:53 +0000 (10:28 -0500)]
Merge branch 'adc1b43'

4 years agoadd new nonascii
John Kitchin [Sat, 24 Jan 2015 15:28:38 +0000 (10:28 -0500)]
add new nonascii

4 years agoMerge branch 'add_copy'
John Kitchin [Wed, 21 Jan 2015 02:59:48 +0000 (21:59 -0500)]
Merge branch 'add_copy'

4 years agoadd copy key at point to file, copy summary to clipboard
John Kitchin [Wed, 21 Jan 2015 02:58:34 +0000 (21:58 -0500)]
add copy key at point to file, copy summary to clipboard

4 years agoadd new character
John Kitchin [Sun, 18 Jan 2015 16:33:54 +0000 (11:33 -0500)]
add new character

4 years agomodify region command to not insert entries with existing doi
John Kitchin [Sat, 10 Jan 2015 19:37:45 +0000 (14:37 -0500)]
modify region command to not insert entries with existing doi

4 years agoadd html output
John Kitchin [Wed, 7 Jan 2015 17:09:07 +0000 (12:09 -0500)]
add html output

4 years agoinitial commit
John Kitchin [Wed, 7 Jan 2015 17:07:24 +0000 (12:07 -0500)]
initial commit

4 years agoadd no tangle line
John Kitchin [Tue, 6 Jan 2015 00:34:09 +0000 (19:34 -0500)]
add no tangle line

4 years agoadd doc at top.
John Kitchin [Mon, 5 Jan 2015 19:55:40 +0000 (14:55 -0500)]
add doc at top.

4 years agoadded to header
John Kitchin [Mon, 5 Jan 2015 19:51:06 +0000 (14:51 -0500)]
added to header

4 years agoremove limitations description in bibtex entry.
John Kitchin [Mon, 5 Jan 2015 19:49:25 +0000 (14:49 -0500)]
remove limitations description in bibtex entry.

4 years agoadd html output for links
John Kitchin [Mon, 5 Jan 2015 19:48:06 +0000 (14:48 -0500)]
add html output for links

4 years agoMerge branch 'master' of https://github.com/jkitchin/org-ref
John Kitchin [Mon, 5 Jan 2015 19:40:31 +0000 (14:40 -0500)]
Merge branch 'master' of https://github.com/jkitchin/org-ref

4 years agoadd new journal and nonascii char
John Kitchin [Mon, 5 Jan 2015 19:40:05 +0000 (14:40 -0500)]
add new journal and nonascii char

4 years agoremoved org-ref references
John Kitchin [Mon, 5 Jan 2015 19:39:19 +0000 (14:39 -0500)]
removed org-ref references

4 years agoadd date and author
John Kitchin [Mon, 5 Jan 2015 19:35:36 +0000 (14:35 -0500)]
add date and author

4 years agoinitial commit
John Kitchin [Mon, 5 Jan 2015 19:35:02 +0000 (14:35 -0500)]
initial commit

4 years agoMerge branch 'master' of https://github.com/jkitchin/org-ref
John Kitchin [Thu, 25 Dec 2014 18:44:06 +0000 (13:44 -0500)]
Merge branch 'master' of https://github.com/jkitchin/org-ref

4 years agoadded new nonascii
John Kitchin [Thu, 25 Dec 2014 18:44:03 +0000 (13:44 -0500)]
added new nonascii

4 years agoadded line to remove http://dx.doi.org if it is in the doi field
John Kitchin [Wed, 24 Dec 2014 17:30:46 +0000 (12:30 -0500)]
added line to remove dx.doi.org if it is in the doi field

4 years agoadded summary citation back to menu. removed : from end.
John Kitchin [Fri, 19 Dec 2014 20:16:26 +0000 (15:16 -0500)]
added summary citation back to menu. removed : from end.

4 years agoadd video links
John Kitchin [Fri, 19 Dec 2014 20:11:48 +0000 (15:11 -0500)]
add video links

4 years agomove quit option to end
John Kitchin [Thu, 18 Dec 2014 19:36:55 +0000 (14:36 -0500)]
move quit option to end

4 years agoadded docs
John Kitchin [Thu, 18 Dec 2014 19:34:54 +0000 (14:34 -0500)]
added docs

4 years agodeleted old minibuffer menu code
John Kitchin [Thu, 18 Dec 2014 19:32:32 +0000 (14:32 -0500)]
deleted old minibuffer menu code

4 years agorewrite of cite menu function
John Kitchin [Thu, 18 Dec 2014 19:29:40 +0000 (14:29 -0500)]
rewrite of cite menu function

now it is user extendable

4 years agoadd jmax-bibtex installation instructions
John Kitchin [Thu, 18 Dec 2014 18:30:02 +0000 (13:30 -0500)]
add jmax-bibtex installation instructions

4 years agoignore .el .elc files
John Kitchin [Thu, 18 Dec 2014 16:02:51 +0000 (11:02 -0500)]
ignore .el .elc files

4 years agocreated a readme
John Kitchin [Thu, 18 Dec 2014 14:59:02 +0000 (09:59 -0500)]
created a readme

4 years agospacing fix
John Kitchin [Thu, 18 Dec 2014 14:58:49 +0000 (09:58 -0500)]
spacing fix

4 years agoadded brief explanation in build section.
John Kitchin [Thu, 18 Dec 2014 14:52:57 +0000 (09:52 -0500)]
added brief explanation in build section.

4 years agorm org-show
John Kitchin [Thu, 18 Dec 2014 14:49:29 +0000 (09:49 -0500)]
rm org-show

4 years agofiltered out org directory as a new repo
John Kitchin [Thu, 18 Dec 2014 14:45:55 +0000 (09:45 -0500)]
filtered out org directory as a new repo

4 years agoa lot of changes
John Kitchin [Wed, 17 Dec 2014 17:35:03 +0000 (12:35 -0500)]
a lot of changes

1. removed reftex setup. it was causing an error for me, and it didn't seem to be doing anythin.

2. add support for labels in link completion

3. minor change to menu string to use jmax-bibtex menu

4. support for index and glossary links

5. small fix to swap reference function