org-ref.git
4 years agofix label click action for occurence plurality
John Kitchin [Tue, 27 Jan 2015 00:36:30 +0000 (19:36 -0500)]
fix label click action for occurence plurality

4 years agomake custom-id links have a message.
John Kitchin [Mon, 26 Jan 2015 22:14:53 +0000 (17:14 -0500)]
make custom-id links have a message.

4 years agoremove custom_id. we cannot ref these.
John Kitchin [Mon, 26 Jan 2015 22:08:54 +0000 (17:08 -0500)]
remove custom_id. we cannot ref these.

4 years agofix issue in bibliography link message
John Kitchin [Mon, 26 Jan 2015 22:08:09 +0000 (17:08 -0500)]
fix issue in bibliography link message

4 years agofix bug in bibliography message
John Kitchin [Mon, 26 Jan 2015 21:53:29 +0000 (16:53 -0500)]
fix bug in bibliography message

4 years agofix insert label to replace if needed
John Kitchin [Mon, 26 Jan 2015 21:39:27 +0000 (16:39 -0500)]
fix insert label to replace if needed

4 years agofixed some issues.
John Kitchin [Mon, 26 Jan 2015 21:25:51 +0000 (16:25 -0500)]
fixed some issues.

added prefix keys for helm commands.

4 years agoupdate insert ref so we can replace current link.
John Kitchin [Mon, 26 Jan 2015 21:04:57 +0000 (16:04 -0500)]
update insert ref so we can replace current link.

4 years agomake double prefix replace ref link
John Kitchin [Mon, 26 Jan 2015 20:49:49 +0000 (15:49 -0500)]
make double prefix replace ref link

4 years agoadd tangle to two blocks
John Kitchin [Mon, 26 Jan 2015 20:31:26 +0000 (15:31 -0500)]
add tangle to two blocks

4 years agofix type
John Kitchin [Mon, 26 Jan 2015 20:22:29 +0000 (15:22 -0500)]
fix type

4 years agorm message box
John Kitchin [Mon, 26 Jan 2015 20:13:53 +0000 (15:13 -0500)]
rm message box

4 years agomany helm integration changes
John Kitchin [Mon, 26 Jan 2015 20:10:58 +0000 (15:10 -0500)]
many helm integration changes

4 years agoadd scopus
John Kitchin [Sun, 25 Jan 2015 23:03:31 +0000 (18:03 -0500)]
add scopus

4 years agoremove messageboxes
John Kitchin [Sun, 25 Jan 2015 19:21:57 +0000 (14:21 -0500)]
remove messageboxes

4 years agomake message function only run in org-mode
John Kitchin [Sun, 25 Jan 2015 19:14:52 +0000 (14:14 -0500)]
make message function only run in org-mode

4 years agofix bug in adding to end of cite link
John Kitchin [Sun, 25 Jan 2015 19:02:28 +0000 (14:02 -0500)]
fix bug in adding to end of cite link

4 years agochange link messages to run in an idle timer
John Kitchin [Sun, 25 Jan 2015 18:53:31 +0000 (13:53 -0500)]
change link messages to run in an idle timer

the command hook was causing the selected region to not be highlighted.

4 years agorm ido-completing
John Kitchin [Sun, 25 Jan 2015 18:38:39 +0000 (13:38 -0500)]
rm ido-completing

4 years agoswitch alternative cite selection to helm
John Kitchin [Sun, 25 Jan 2015 18:30:52 +0000 (13:30 -0500)]
switch alternative cite selection to helm

4 years agoget rid of message box.
John Kitchin [Sun, 25 Jan 2015 18:20:19 +0000 (13:20 -0500)]
get rid of message box.

4 years agospace fix
John Kitchin [Sun, 25 Jan 2015 18:16:22 +0000 (13:16 -0500)]
space fix

4 years agotest bib file
John Kitchin [Sun, 25 Jan 2015 17:54:38 +0000 (12:54 -0500)]
test bib file

4 years agoadd message box to check prefix
John Kitchin [Sun, 25 Jan 2015 17:52:40 +0000 (12:52 -0500)]
add message box to check prefix

4 years agowrap in save-excursion
John Kitchin [Sun, 25 Jan 2015 17:40:05 +0000 (12:40 -0500)]
wrap in save-excursion

4 years agoadd eqref to link message
John Kitchin [Sun, 25 Jan 2015 16:47:47 +0000 (11:47 -0500)]
add eqref to link message

4 years agoclean up and add description
John Kitchin [Sun, 25 Jan 2015 16:37:40 +0000 (11:37 -0500)]
clean up and add description

4 years agoadd try to get pdf if you do not have it
John Kitchin [Sun, 25 Jan 2015 16:36:12 +0000 (11:36 -0500)]
add try to get pdf if you do not have it

4 years agotweaks getting minibuffer messages to work
John Kitchin [Sun, 25 Jan 2015 15:57:17 +0000 (10:57 -0500)]
tweaks getting minibuffer messages to work

4 years agomore changes to get helm working cleanly
John Kitchin [Sun, 25 Jan 2015 15:30:36 +0000 (10:30 -0500)]
more changes to get helm working cleanly

4 years agoremove large output
John Kitchin [Sun, 25 Jan 2015 00:59:58 +0000 (19:59 -0500)]
remove large output

4 years agofix missing )
John Kitchin [Sun, 25 Jan 2015 00:42:28 +0000 (19:42 -0500)]
fix missing )

4 years agoadd function to give message when on a cite link.
John Kitchin [Sun, 25 Jan 2015 00:34:49 +0000 (19:34 -0500)]
add function to give message when on a cite link.

and customization variables to turn it off.

4 years agoadded user functions to helm menu
John Kitchin [Sat, 24 Jan 2015 23:24:22 +0000 (18:24 -0500)]
added user functions to helm menu

4 years agoadded significant new helm integration for cite click.
John Kitchin [Sat, 24 Jan 2015 22:57:39 +0000 (17:57 -0500)]
added significant new helm integration for cite click.

4 years agostart of the helm click menu
John Kitchin [Sat, 24 Jan 2015 19:24:13 +0000 (14:24 -0500)]
start of the helm click menu

4 years agoadded the beginning of an interface to helm-bibtex
John Kitchin [Sat, 24 Jan 2015 19:02:48 +0000 (14:02 -0500)]
added the beginning of an interface to helm-bibtex

4 years agoMerge branch 'adc1b43'
John Kitchin [Sat, 24 Jan 2015 15:28:53 +0000 (10:28 -0500)]
Merge branch 'adc1b43'

4 years agoadd new nonascii
John Kitchin [Sat, 24 Jan 2015 15:28:38 +0000 (10:28 -0500)]
add new nonascii

4 years agoMerge branch 'add_copy'
John Kitchin [Wed, 21 Jan 2015 02:59:48 +0000 (21:59 -0500)]
Merge branch 'add_copy'

4 years agoadd copy key at point to file, copy summary to clipboard
John Kitchin [Wed, 21 Jan 2015 02:58:34 +0000 (21:58 -0500)]
add copy key at point to file, copy summary to clipboard

4 years agoadd new character
John Kitchin [Sun, 18 Jan 2015 16:33:54 +0000 (11:33 -0500)]
add new character

4 years agomodify region command to not insert entries with existing doi
John Kitchin [Sat, 10 Jan 2015 19:37:45 +0000 (14:37 -0500)]
modify region command to not insert entries with existing doi

4 years agoadd html output
John Kitchin [Wed, 7 Jan 2015 17:09:07 +0000 (12:09 -0500)]
add html output

4 years agoinitial commit
John Kitchin [Wed, 7 Jan 2015 17:07:24 +0000 (12:07 -0500)]
initial commit

4 years agoadd no tangle line
John Kitchin [Tue, 6 Jan 2015 00:34:09 +0000 (19:34 -0500)]
add no tangle line

4 years agoadd doc at top.
John Kitchin [Mon, 5 Jan 2015 19:55:40 +0000 (14:55 -0500)]
add doc at top.

4 years agoadded to header
John Kitchin [Mon, 5 Jan 2015 19:51:06 +0000 (14:51 -0500)]
added to header

4 years agoremove limitations description in bibtex entry.
John Kitchin [Mon, 5 Jan 2015 19:49:25 +0000 (14:49 -0500)]
remove limitations description in bibtex entry.

4 years agoadd html output for links
John Kitchin [Mon, 5 Jan 2015 19:48:06 +0000 (14:48 -0500)]
add html output for links

4 years agoMerge branch 'master' of https://github.com/jkitchin/org-ref
John Kitchin [Mon, 5 Jan 2015 19:40:31 +0000 (14:40 -0500)]
Merge branch 'master' of https://github.com/jkitchin/org-ref

4 years agoadd new journal and nonascii char
John Kitchin [Mon, 5 Jan 2015 19:40:05 +0000 (14:40 -0500)]
add new journal and nonascii char

4 years agoremoved org-ref references
John Kitchin [Mon, 5 Jan 2015 19:39:19 +0000 (14:39 -0500)]
removed org-ref references

4 years agoadd date and author
John Kitchin [Mon, 5 Jan 2015 19:35:36 +0000 (14:35 -0500)]
add date and author

4 years agoinitial commit
John Kitchin [Mon, 5 Jan 2015 19:35:02 +0000 (14:35 -0500)]
initial commit

4 years agoMerge branch 'master' of https://github.com/jkitchin/org-ref
John Kitchin [Thu, 25 Dec 2014 18:44:06 +0000 (13:44 -0500)]
Merge branch 'master' of https://github.com/jkitchin/org-ref

4 years agoadded new nonascii
John Kitchin [Thu, 25 Dec 2014 18:44:03 +0000 (13:44 -0500)]
added new nonascii

4 years agoadded line to remove http://dx.doi.org if it is in the doi field
John Kitchin [Wed, 24 Dec 2014 17:30:46 +0000 (12:30 -0500)]
added line to remove dx.doi.org if it is in the doi field

4 years agoadded summary citation back to menu. removed : from end.
John Kitchin [Fri, 19 Dec 2014 20:16:26 +0000 (15:16 -0500)]
added summary citation back to menu. removed : from end.

4 years agoadd video links
John Kitchin [Fri, 19 Dec 2014 20:11:48 +0000 (15:11 -0500)]
add video links

4 years agomove quit option to end
John Kitchin [Thu, 18 Dec 2014 19:36:55 +0000 (14:36 -0500)]
move quit option to end

4 years agoadded docs
John Kitchin [Thu, 18 Dec 2014 19:34:54 +0000 (14:34 -0500)]
added docs

4 years agodeleted old minibuffer menu code
John Kitchin [Thu, 18 Dec 2014 19:32:32 +0000 (14:32 -0500)]
deleted old minibuffer menu code

4 years agorewrite of cite menu function
John Kitchin [Thu, 18 Dec 2014 19:29:40 +0000 (14:29 -0500)]
rewrite of cite menu function

now it is user extendable

4 years agoadd jmax-bibtex installation instructions
John Kitchin [Thu, 18 Dec 2014 18:30:02 +0000 (13:30 -0500)]
add jmax-bibtex installation instructions

4 years agoignore .el .elc files
John Kitchin [Thu, 18 Dec 2014 16:02:51 +0000 (11:02 -0500)]
ignore .el .elc files

4 years agocreated a readme
John Kitchin [Thu, 18 Dec 2014 14:59:02 +0000 (09:59 -0500)]
created a readme

4 years agospacing fix
John Kitchin [Thu, 18 Dec 2014 14:58:49 +0000 (09:58 -0500)]
spacing fix

4 years agoadded brief explanation in build section.
John Kitchin [Thu, 18 Dec 2014 14:52:57 +0000 (09:52 -0500)]
added brief explanation in build section.

4 years agorm org-show
John Kitchin [Thu, 18 Dec 2014 14:49:29 +0000 (09:49 -0500)]
rm org-show

4 years agofiltered out org directory as a new repo
John Kitchin [Thu, 18 Dec 2014 14:45:55 +0000 (09:45 -0500)]
filtered out org directory as a new repo

4 years agoa lot of changes
John Kitchin [Wed, 17 Dec 2014 17:35:03 +0000 (12:35 -0500)]
a lot of changes

1. removed reftex setup. it was causing an error for me, and it didn't seem to be doing anythin.

2. add support for labels in link completion

3. minor change to menu string to use jmax-bibtex menu

4. support for index and glossary links

5. small fix to swap reference function

4 years agogive option for which bibliography to save doi in
John Kitchin [Fri, 12 Dec 2014 12:20:57 +0000 (07:20 -0500)]
give option for which bibliography to save doi in

4 years agoadd crossref and pubmed menu options, add pubmed function. modify add from doi functi...
John Kitchin [Fri, 7 Nov 2014 13:38:43 +0000 (08:38 -0500)]
add crossref and pubmed menu options, add pubmed function. modify add from doi function to prompt for a bibfile to add to , and not add duplicate entries with the same doi.

4 years agoadded new doi menu link for org-mode
John Kitchin [Wed, 5 Nov 2014 15:15:22 +0000 (10:15 -0500)]
added new doi menu link for org-mode

4 years agoadd nobibliography link
John Kitchin [Thu, 30 Oct 2014 23:41:19 +0000 (19:41 -0400)]
add nobibliography link

4 years agoadd bibentry, fix multientry bibliographies, and org-show-entry
John Kitchin [Tue, 21 Oct 2014 00:17:18 +0000 (20:17 -0400)]
add bibentry, fix multientry bibliographies, and org-show-entry

4 years agoadd alias
John Kitchin [Tue, 30 Sep 2014 17:26:41 +0000 (13:26 -0400)]
add alias

4 years agoopen notes from reftex
John Kitchin [Tue, 30 Sep 2014 17:24:48 +0000 (13:24 -0400)]
open notes from reftex

4 years agoadd user function for opening notes
John Kitchin [Thu, 25 Sep 2014 13:03:09 +0000 (09:03 -0400)]
add user function for opening notes

4 years agoopen notes in second window. expand section
John Kitchin [Thu, 25 Sep 2014 00:37:23 +0000 (20:37 -0400)]
open notes in second window. expand section

4 years agoshow children in notes.
John Kitchin [Wed, 24 Sep 2014 22:30:15 +0000 (18:30 -0400)]
show children in notes.

4 years agorm message
John Kitchin [Wed, 24 Sep 2014 18:42:36 +0000 (14:42 -0400)]
rm message

4 years agofix bug where clicking on cite: gives an error
John Kitchin [Wed, 24 Sep 2014 14:55:48 +0000 (10:55 -0400)]
fix bug where clicking on cite: gives an error

5 years agomodify centering on open note, and show entry
John Kitchin [Tue, 23 Sep 2014 20:18:24 +0000 (16:18 -0400)]
modify centering on open note, and show entry

5 years agomake open the notes show the subtree and go to the beginning of the line
John Kitchin [Tue, 23 Sep 2014 16:33:50 +0000 (12:33 -0400)]
make open the notes show the subtree and go to the beginning of the line

5 years agoadd proceedings article type
John Kitchin [Tue, 23 Sep 2014 16:21:07 +0000 (12:21 -0400)]
add proceedings article type

5 years agoexpand bibliography link filename
John Kitchin [Tue, 23 Sep 2014 16:20:42 +0000 (12:20 -0400)]
expand bibliography link filename

5 years agoorg-show image
John Kitchin [Thu, 18 Sep 2014 18:50:25 +0000 (14:50 -0400)]
org-show image

5 years agoMake org-show images display only in one buffer
prtkm [Wed, 17 Sep 2014 02:54:37 +0000 (22:54 -0400)]
Make org-show images display only in one buffer

5 years agofix bug. When a file is first opened, clicking on links would not work until the...
John Kitchin [Sat, 13 Sep 2014 16:11:47 +0000 (12:11 -0400)]
fix bug. When a file is first opened, clicking on links would not work until the bibfile was opened or a citation inserted. I think this is a bug somewhere in reftex, where a variable is initialized after a reftex function is called. this seems to solve the problem.

5 years agoignore errors if eimp does not load
John Kitchin [Mon, 8 Sep 2014 20:29:24 +0000 (16:29 -0400)]
ignore errors if eimp does not load

5 years agoturn off flyspell if it is on during show, and turn it back on after. make exit org...
John Kitchin [Thu, 4 Sep 2014 13:33:18 +0000 (09:33 -0400)]
turn off flyspell if it is on during show, and turn it back on after. make exit org-show mode stop show

5 years agoattempt to add org export
John Kitchin [Sun, 17 Aug 2014 17:55:08 +0000 (13:55 -0400)]
attempt to add org export

5 years agoupdate so you can have better html bibliography export
John Kitchin [Wed, 13 Aug 2014 21:27:45 +0000 (17:27 -0400)]
update so you can have better html bibliography export

5 years agomaking progress towards better html export. It is not done yet.
John Kitchin [Tue, 12 Aug 2014 23:02:19 +0000 (19:02 -0400)]
making progress towards better html export. It is not done yet.

5 years agoadd documentation to html export variable
John Kitchin [Sun, 10 Aug 2014 19:30:09 +0000 (15:30 -0400)]
add documentation to html export variable

5 years agoadd :tangle no to some blocks. For some people it seems that no is not the default
John Kitchin [Sun, 10 Aug 2014 19:29:35 +0000 (15:29 -0400)]
add :tangle no to some blocks. For some people it seems that no is not the default

5 years agoadd journal article
John Kitchin [Sat, 9 Aug 2014 20:26:58 +0000 (16:26 -0400)]
add journal article

5 years agomodify click function to work on cite links with a description.
John Kitchin [Thu, 7 Aug 2014 13:36:34 +0000 (09:36 -0400)]
modify click function to work on cite links with a description.