X-Git-Url: https://git.donarmstrong.com/?p=org-ref.git;a=blobdiff_plain;f=org-ref.org;h=4b814f43499dfe4435fa1cf387f76ff8322feab6;hp=3a829c7516a6a0ecc427d4ff677946f8e750d91a;hb=09e5acadb48305e8df7969f279281014545a07bb;hpb=3db79817e2a4341f2815489676381fcae7ef87f0

diff --git a/org-ref.org b/org-ref.org
index 3a829c7..4b814f4 100644
--- a/org-ref.org
+++ b/org-ref.org
@@ -485,7 +485,7 @@ This code provides some functions to generate a simple sorted bibliography in ht
 
 #+BEGIN_SRC emacs-lisp :tangle org-ref.el
 (defun org-ref-get-bibtex-keys ()
-  "return a list of unique keys in the buffer."
+  "Return a list of unique keys in the buffer."
   (let ((keys '()))
     (org-element-map (org-element-parse-buffer) 'link
       (lambda (link)
@@ -495,7 +495,9 @@ This code provides some functions to generate a simple sorted bibliography in ht
 		(key
 		 (org-ref-split-and-strip-string (plist-get plist ':path)))
 	      (when (not (-contains? keys key))
-		(setq keys (append keys (list key)))))))))
+		(setq keys (append keys (list key))))))))
+      ;; set with-affiliated to get keys in captions
+      nil nil nil t)
     ;; Sort keys alphabetically
     (setq keys (cl-sort keys 'string-lessp :key 'downcase))
     keys))
@@ -2612,13 +2614,21 @@ Makes a new buffer with clickable links."
     (org-element-map (org-element-parse-buffer) 'link
       (lambda (link)
 	(let ((plist (nth 1 link)))
-	  (when (equal (plist-get plist ':type) "cite")
-	    (dolist (key (org-ref-split-and-strip-string (plist-get plist ':path)) )
+	  (when (-contains? org-ref-cite-types (plist-get plist :type))
+	    (dolist (key (org-ref-split-and-strip-string (plist-get plist :path)))
 	      (when (not (index key bibtex-keys))
-		(setq bad-citations (append bad-citations
-					    `(,(format "%s [[elisp:(progn (switch-to-buffer-other-frame \"%s\")(goto-char %s))][not found here]]\n"
-						       key (buffer-name)(plist-get plist ':begin)))))
-		))))))
+		(message-box "%s" link)
+		(setq
+		 bad-citations
+		 (append
+		  bad-citations
+		  `(,(format "%s [[elisp:(progn (switch-to-buffer-other-frame \"%s\")(goto-char %s))][not found here]]\n"
+			     key
+			     (buffer-name)
+			     (plist-get plist :begin)))))
+		)))))
+      ;; set with-affilates to t to get citations in a caption
+      nil nil nil t)
 
     (if bad-citations
       (progn
@@ -2657,46 +2667,18 @@ Here we develop a similar idea, but instead of an org-buffer with links, we crea
     (org-element-map (org-element-parse-buffer) 'link
       (lambda (link)
 	(let ((plist (nth 1 link)))
-	  (when (-contains? org-ref-cite-types (plist-get plist ':type))
-	    (dolist (key (org-ref-split-and-strip-string (plist-get plist ':path)) )
+	  (when (-contains? org-ref-cite-types (plist-get plist :type))
+	    (dolist (key (org-ref-split-and-strip-string (plist-get plist :path)) )
 	      (when (not (index key bibtex-keys))
-		(goto-char (plist-get plist ':begin))
+		(goto-char (plist-get plist :begin))
 		(re-search-forward key)
 		(push (cons key (point-marker)) bad-citations)))
-	      ))))
+	    )))
+      ;; add with-affiliates to get cites in caption
+      nil nil nil t)
     (goto-char cp)
     bad-citations))
 
-;; It seems I forgot I already defined this earlier!
-;; (defun org-ref-get-labels ()
-;;   "Returns a list of known labels in the org document. These include label links, latex labels, label tags, and table names. The list contains all labels, not just unique ones.
-;; "
-;;   (let ((cp (point))
-;;	(labels '()))
-;;     (goto-char (point-min))
-;;     (while (re-search-forward "[^#+]label:\\(.*\\)\\s-" nil t)
-;;       (push  (match-string 1) labels))
-
-;;     (goto-char (point-min))
-;;     (while (re-search-forward "\\label{\\(.*\\)}\\s-?" nil t)
-;;       (push (match-string 1) labels))
-
-;;     (goto-char (point-min))
-;;     (while (re-search-forward "^#\\+label:\\s-*\\(.*\\)" nil t)
-;;       (push (match-string 1) labels))
-
-;;     (goto-char (point-min))
-;;     (while (re-search-forward "^#\\+tblname:\\s-*\\(.*\\)" nil t)
-;;       (push (match-string 1) labels))
-;;     ;; check for CUSTOM_ID
-;;     (org-map-entries
-;;      (lambda ()
-;;        (when (org-entry-get (point) "CUSTOM_ID")
-;;	 (push (org-entry-get (point) "CUSTOM_ID") labels))))
-;;     ;; return to original place
-;;     (goto-char cp)
-;;     labels))
-
 
 (defun org-ref-bad-ref-candidates ()
   "Returns a list of conses (ref . marker) where ref is a ref link that does not point to anything (i.e. a label)."
@@ -3338,8 +3320,7 @@ With two prefix args, insert a label link."
        helm-bibtex-fallback-options))
 
 (setq helm-bibtex-fallback-options
-      (-insert-at 1 '("Open Web of Science" . (lambda () (browse-url "http://apps.webofknowledge.com")))
-		  helm-bibtex-fallback-options))
+      (-insert-at 1 '("WOS" . "http://gateway.webofknowledge.com/gateway/Gateway.cgi?topic=%s&GWVersion=2&SrcApp=WEB&SrcAuth=HSB&DestApp=UA&DestLinkType=GeneralSearchSummary") helm-bibtex-fallback-options))
 #+END_SRC
 
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