X-Git-Url: https://git.donarmstrong.com/?p=org-ref.git;a=blobdiff_plain;f=org-ref.org;h=44aa74b7541844d857924bc3f64cd1fd6476c44c;hp=c9518c8865c0a02181fc9e67e9896a94826880c9;hb=076d9bffd0ed994a5a7452799f72ea8ce8553537;hpb=b818d84987ee230c0d8186ddcf7ac4c5c836bcdf;ds=sidebyside

diff --git a/org-ref.org b/org-ref.org
index c9518c8..44aa74b 100644
--- a/org-ref.org
+++ b/org-ref.org
@@ -242,26 +242,6 @@ We setup reftex here. We use a custom insert cite link function defined here: [[
   (kbd org-ref-insert-cite-key)
   org-ref-insert-cite-function)
 
-(when org-ref-show-citation-on-enter
- (setq org-ref-message-timer
-       (run-with-idle-timer 0.5 t 'org-ref-link-message)))
-
-(defun org-ref-show-link-messages ()
-  "Turn on link messages. You will see a message in the
-minibuffer when on a cite, ref or label link."
-  (interactive)
-  (setq org-ref-message-timer
-	(run-with-idle-timer 0.5 t 'org-ref-link-message))
-  )
-(defun org-ref-cancel-link-messages ()
-  "Stop showing messages in minibuffer when on a link."
-  (interactive)
-  (cancel-timer org-ref-message-timer))
-
-;; this approach caused the selected region to not be highlighted any more.
-; (add-hook 'post-command-hook 'org-ref-link-message))
-; (remove-hook 'post-command-hook 'org-ref-link-message))
-
 (add-hook 'org-mode-hook 'org-mode-reftex-setup)
 
 (eval-after-load 'reftex-vars
@@ -297,6 +277,100 @@ You can define a new citation link like this:
 (org-ref-define-citation-link "citez" ?z)
 #+END_SRC
 
+** Messages for link at cursor
+Here we setup code that shows you a context message for the element under the cursor when emacs is idle.
+#+BEGIN_SRC emacs-lisp :tangle org-ref.el
+(defvar org-ref-message-timer nil
+  "Variable to store the link message timer in.")
+
+
+(defun org-ref-show-link-messages ()
+  "Turn on link messages. You will see a message in the
+minibuffer when on a cite, ref or label link."
+  (interactive)
+  (or org-ref-message-timer
+      (setq org-ref-message-timer
+	    (run-with-idle-timer 0.5 t 'org-ref-link-message))))
+
+
+(defun org-ref-cancel-link-messages ()
+  "Stop showing messages in minibuffer when on a link."
+  (interactive)
+  (cancel-timer org-ref-message-timer)
+  (setq org-ref-message-timer nil))
+
+
+(when org-ref-show-citation-on-enter
+  (org-ref-show-link-messages))
+
+;; this approach caused the selected region to not be highlighted any more.
+; (add-hook 'post-command-hook 'org-ref-link-message))
+; (remove-hook 'post-command-hook 'org-ref-link-message))
+#+END_SRC
+
+** Messages for context under mouse pointer
+Sometimes, when reading a document, I actually use the mouse more than the cursor. This code enables the mouse cursor to trigger a message in the minibuffer about what is under the cursor. I run this on a timer.
+
+The basic idea here is to get the mouse position, and if we can determine there is a character that (point) can move to, we move (point) and run the org-ref-link-message function. Since this runs on a timer, we store the last mouse position, and only run the function when the mouse has moved to avoid getting messages every time the timer runs.
+
+#+BEGIN_SRC emacs-lisp :tangle org-ref.el
+(defvar org-ref-last-mouse-pos nil
+ "Stores last mouse position for use in `org-ref-mouse-message'.")
+
+(defun org-ref-can-move-p ()
+  "See if a character is under the mouse. If so return the position for `goto-char'."
+  (let* ((line (cddr org-ref-last-mouse-pos))
+	 (col  (cadr org-ref-last-mouse-pos)))
+    (save-excursion
+      (goto-char (window-start))
+      (forward-line line)
+      (if
+	  (> (- (line-end-position) (line-beginning-position)) col)
+	  (progn  (forward-char col) (point))
+	nil))))
+
+
+(defun org-ref-mouse-message ()
+  "Display message for link under mouse cursor"
+  (interactive)
+  (when (not (equal (mouse-position) org-ref-last-mouse-pos))
+    (setq org-ref-last-mouse-pos (mouse-position))
+    (let ((p (org-ref-can-move-p)))
+      (when p
+	  (save-excursion
+	    (goto-char p)
+	    (org-ref-link-message))))))
+
+
+(defvar org-ref-message-timer-mouse nil
+  "Store mouse timer.")
+
+
+(defvar org-ref-mouse-message-interval 0.5
+  "How often to run the mouse message timer in seconds")
+
+
+(defun org-ref-mouse-messages-on ()
+  "Turn on mouse messages."
+  (interactive)
+  (or org-ref-message-timer-mouse
+      (setq org-ref-message-timer-mouse
+	    (run-at-time "0.5 sec"
+			 org-ref-mouse-message-interval
+			 'org-ref-mouse-message))))
+
+
+(defun org-ref-mouse-messages-off ()
+  "Turn off mouse messages"
+  (interactive)
+  (cancel-timer org-ref-message-timer-mouse)
+  (setq org-ref-message-timer-mouse nil)
+  (message "Mouse messages are off"))
+#+END_SRC
+
+#+RESULTS:
+: org-ref-mouse-messages-off
+
 * Links
 Most of this library is the creation of functional links to help with references and citations.
 ** General utilities
@@ -1944,7 +2018,25 @@ We will want to generate formatting functions for each citation type. The reason
 	 ;; bibtex format
        (concat "\\" ,type (when desc (org-ref-format-citation-description desc)) "{"
 	       (mapconcat (lambda (key) key) (org-ref-split-and-strip-string keyword) ",")
-	       "}"))))))
+	       "}")))
+      ;; for markdown we generate pandoc citations
+      ((eq format 'md)
+       (cond
+	(desc  ;; pre and or post text
+	 (let* ((text (split-string desc "::"))
+		(pre (car text))
+		(post (cadr text)))
+	   (concat
+	    (format "[@%s," keyword)
+	    (when pre (format " %s" pre))
+	    (when post (format ", %s" post))
+	    "]")))
+	(t
+	 (format "[%s]"
+		 (mapconcat
+		  (lambda (key) (concat "@" key))
+		  (org-ref-split-and-strip-string keyword)
+		  "; "))))))))
 #+END_SRC
 
 
@@ -2453,8 +2545,8 @@ Here is the python script for uploading.
 *************** TODO document how to get the cookies
 *************** END
 
-
-#+BEGIN_SRC python :tangle upload_bibtex_citeulike.py
+# :tangle upload_bibtex_citeulike.py
+#+BEGIN_SRC python
 #!python
 import pickle, requests, sys
 
@@ -2667,46 +2759,18 @@ Here we develop a similar idea, but instead of an org-buffer with links, we crea
     (org-element-map (org-element-parse-buffer) 'link
       (lambda (link)
 	(let ((plist (nth 1 link)))
-	  (when (-contains? org-ref-cite-types (plist-get plist ':type))
-	    (dolist (key (org-ref-split-and-strip-string (plist-get plist ':path)) )
+	  (when (-contains? org-ref-cite-types (plist-get plist :type))
+	    (dolist (key (org-ref-split-and-strip-string (plist-get plist :path)) )
 	      (when (not (index key bibtex-keys))
-		(goto-char (plist-get plist ':begin))
+		(goto-char (plist-get plist :begin))
 		(re-search-forward key)
 		(push (cons key (point-marker)) bad-citations)))
-	      ))))
+	    )))
+      ;; add with-affiliates to get cites in caption
+      nil nil nil t)
     (goto-char cp)
     bad-citations))
 
-;; It seems I forgot I already defined this earlier!
-;; (defun org-ref-get-labels ()
-;;   "Returns a list of known labels in the org document. These include label links, latex labels, label tags, and table names. The list contains all labels, not just unique ones.
-;; "
-;;   (let ((cp (point))
-;;	(labels '()))
-;;     (goto-char (point-min))
-;;     (while (re-search-forward "[^#+]label:\\(.*\\)\\s-" nil t)
-;;       (push  (match-string 1) labels))
-
-;;     (goto-char (point-min))
-;;     (while (re-search-forward "\\label{\\(.*\\)}\\s-?" nil t)
-;;       (push (match-string 1) labels))
-
-;;     (goto-char (point-min))
-;;     (while (re-search-forward "^#\\+label:\\s-*\\(.*\\)" nil t)
-;;       (push (match-string 1) labels))
-
-;;     (goto-char (point-min))
-;;     (while (re-search-forward "^#\\+tblname:\\s-*\\(.*\\)" nil t)
-;;       (push (match-string 1) labels))
-;;     ;; check for CUSTOM_ID
-;;     (org-map-entries
-;;      (lambda ()
-;;        (when (org-entry-get (point) "CUSTOM_ID")
-;;	 (push (org-entry-get (point) "CUSTOM_ID") labels))))
-;;     ;; return to original place
-;;     (goto-char cp)
-;;     labels))
-
 
 (defun org-ref-bad-ref-candidates ()
   "Returns a list of conses (ref . marker) where ref is a ref link that does not point to anything (i.e. a label)."
@@ -3348,8 +3412,7 @@ With two prefix args, insert a label link."
        helm-bibtex-fallback-options))
 
 (setq helm-bibtex-fallback-options
-      (-insert-at 1 '("Open Web of Science" . (lambda () (browse-url "http://apps.webofknowledge.com")))
-		  helm-bibtex-fallback-options))
+      (-insert-at 1 '("WOS" . "http://gateway.webofknowledge.com/gateway/Gateway.cgi?topic=%s&GWVersion=2&SrcApp=WEB&SrcAuth=HSB&DestApp=UA&DestLinkType=GeneralSearchSummary") helm-bibtex-fallback-options))
 #+END_SRC
 
 ** A helm click menu