add makefile

[org-ref.git] / org-ref.org

diff --git a/org-ref.org b/org-ref.org
index 166536f2fe43f5e5f66fc2ef42c098282e8098ab..6124b7f7ce3399ecc7ad14012b203f0b854e2a5f 100644 (file)
--- a/org-ref.org
+++ b/org-ref.org
@@ -67,6 +67,8 @@ The only external require is reftex-cite
 (require 'dash)
 (require 'helm)
 (require 'helm-bibtex)
+(require 'org)
+(require 'cl-lib)
 #+END_SRC
 
 ** Custom variables
@@ -386,13 +388,16 @@ cite*:sokalski-2012-optim-ta,zhang-2011-spatial-tio2,li-2012-heter-ceram,li-2013
 
 citenum:sokalski-2012-optim-ta,zhang-2011-spatial-tio2,li-2012-heter-ceram,li-2013-photoc
 
+ref:test
+
+label:test
+
 #+BEGIN_SRC emacs-lisp
 (defcustom org-ref-colorize-links
-  nil
+  t
   "When non-nil, change colors of links"
   :group 'org-ref)
 
-
 (defcustom org-ref-cite-color
   "forest green"
   "Color of cite like links"
@@ -400,7 +405,7 @@ citenum:sokalski-2012-optim-ta,zhang-2011-spatial-tio2,li-2012-heter-ceram,li-20
 
 
 (defcustom org-ref-ref-color
-  "royal blue"
+  "dark red"
   "Color of ref like links"
   :group 'org-ref)
 
@@ -416,7 +421,11 @@ citenum:sokalski-2012-optim-ta,zhang-2011-spatial-tio2,li-2012-heter-ceram,li-20
 
 
 (setq org-ref-cite-re
-  (concat "\\(" (mapconcat 'identity org-ref-cite-types "\\|") "\\)"
+      (concat "\\(" (mapconcat
+                    (lambda (x)
+                      (replace-regexp-in-string "\*" "\\\\*" x)
+                      )
+                    org-ref-cite-types "\\|") "\\)"
   ":\\([a-zA-Z0-9-_:]*,?\\)*"))
 
 
@@ -430,15 +439,18 @@ citenum:sokalski-2012-optim-ta,zhang-2011-spatial-tio2,li-2012-heter-ceram,li-20
 
 (defface org-ref-cite-face
   `((t (:inherit org-link :foreground ,org-ref-cite-color)))
-  "Color for cite links")
+  "Color for cite-like links in org-ref.")
+
 
 (defface org-ref-label-face
   `((t (:inherit org-link :foreground ,org-ref-label-color)))
-  "Color for cite links")
+  "Color for ref links in org-ref.")
+
 
 (defface org-ref-ref-face
   `((t (:inherit org-link :foreground ,org-ref-ref-color)))
-  "Color for cite links")
+  "Face for ref links in org-ref.")
+
 
 (when org-ref-colorize-links
   (highlight-regexp org-ref-cite-re 'org-ref-cite-face)
@@ -600,7 +612,7 @@ environment, only %l is available."
        (file) (entry) (bibtex-entry) (entry-type) (format))
 
     (setq file (catch 'result
-                (loop for file in org-ref-bibliography-files do
+                (cl-loop for file in org-ref-bibliography-files do
                       (if (org-ref-key-in-file-p key (file-truename file))
                           (throw 'result file)
                         (message "%s not found in %s" key (file-truename file))))))
@@ -690,7 +702,7 @@ First, we get the string for a single entry.
        (file) (entry) (bibtex-entry) (entry-type) (format))
 
     (setq file (catch 'result
-                (loop for file in org-ref-bibliography-files do
+                (cl-loop for file in org-ref-bibliography-files do
                       (if (org-ref-key-in-file-p key (file-truename file))
                           (throw 'result file)
                         (message "%s not found in %s" key (file-truename file))))))
@@ -1394,7 +1406,7 @@ Use C-u C-u to insert a [[#custom-id]] link
 
     (helm :input (thing-at-point 'word)
          :sources `(((name . "Available labels to ref")
-                     (candidates . ,(loop for label in labels
+                     (candidates . ,(cl-loop for label in labels
                                           for context in contexts
                                           ;; we do some kludgy adding spaces
                                           ;; and bars to make it "easier" to
@@ -1718,7 +1730,7 @@ Finally, we want to know which file the key is in.
    (unless key
      (setq key (org-ref-get-bibtex-key-under-cursor)))
    (setq file     (catch 'result
-                   (loop for file in org-ref-bibliography-files do
+                   (cl-loop for file in org-ref-bibliography-files do
                          (if (org-ref-key-in-file-p key (file-truename file))
                              (throw 'result file)))))
    (cons key file)))
@@ -2419,7 +2431,7 @@ This assumes you are in an article."
   (bibtex-beginning-of-entry)
   (let* ((cb (current-buffer))
         (bibtex-expand-strings t)
-        (entry (loop for (key . value) in (bibtex-parse-entry t)
+        (entry (cl-loop for (key . value) in (bibtex-parse-entry t)
                      collect (cons (downcase key) value)))
         (title (replace-regexp-in-string "\n\\|\t\\|\s+" " " (reftex-get-bib-field "title" entry)))
         (year  (reftex-get-bib-field "year" entry))
@@ -2447,7 +2459,7 @@ This assumes you are in an article."
   (bibtex-beginning-of-entry)
   (let* ((cb (current-buffer))
         (bibtex-expand-strings t)
-        (entry (loop for (key . value) in (bibtex-parse-entry t)
+        (entry (cl-loop for (key . value) in (bibtex-parse-entry t)
                      collect (cons (downcase key) value)))
         (title (replace-regexp-in-string "\n\\|\t\\|\s+" " " (reftex-get-bib-field "title" entry)))
         (year  (reftex-get-bib-field "year" entry))
@@ -2504,7 +2516,7 @@ construct the heading by hand."
   (bibtex-beginning-of-entry)
   (let* ((cb (current-buffer))
         (bibtex-expand-strings t)
-        (entry (loop for (key . value) in (bibtex-parse-entry t)
+        (entry (cl-loop for (key . value) in (bibtex-parse-entry t)
                      collect (cons (downcase key) value)))
         (title (replace-regexp-in-string "\n\\|\t\\|\s+" " " (reftex-get-bib-field "title" entry)))
         (year  (reftex-get-bib-field "year" entry))
@@ -3601,7 +3613,7 @@ Checks for pdf and doi, and add appropriate functions."
                    (email-bibtex-entry))))
      t)
   ;; finally return a numbered list of the candidates
-  (loop for i from 0
+  (cl-loop for i from 0
        for cell in candidates
        collect (cons (format "%2s. %s" i (car cell))
                      (cdr cell)))))