From 63f84533ffc7746ae328e34999dc7d63b56f70c8 Mon Sep 17 00:00:00 2001 From: Don Armstrong Date: Thu, 2 Feb 2017 17:10:51 -0800 Subject: [PATCH] describe environment size calculations --- kinetic_formalism_competition.Rnw | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/kinetic_formalism_competition.Rnw b/kinetic_formalism_competition.Rnw index 54e7fa8..79900c8 100644 --- a/kinetic_formalism_competition.Rnw +++ b/kinetic_formalism_competition.Rnw @@ -1406,6 +1406,12 @@ $10^{-10}\mathrm{M}$. The base concentration ($10^{-10}\mathrm{M}$) can also be altered at the initialization of the experiment to specific values for specific lipid types or components. +The environment is a volume which is the maximum number of vesicles +from a single simulation (4096) times the maximum size of the vesicle +(usually 10000) divided by Avagadro's number divided by the total +environmental lipid concentration, or usually +\Sexpr{4096*10000/6.022E23/141E-10}~L. + \subsection{Initial Vesicle Creation} Initial vesicles are seeded by selecting lipid molecules from the -- 2.39.2