From: Don Armstrong <don@donarmstrong.com>
Date: Sat, 29 Oct 2016 00:45:15 +0000 (-0700)
Subject: use knitr caching
X-Git-Url: https://git.donarmstrong.com/?p=ool%2Flipid_simulation_formalism.git;a=commitdiff_plain;h=ae9b56c9c1767ee82580da0ab083c7ba7b1bf8ea

use knitr caching
---

diff --git a/kinetic_formalism.Rnw b/kinetic_formalism.Rnw
index d38a231..fccc4af 100644
--- a/kinetic_formalism.Rnw
+++ b/kinetic_formalism.Rnw
@@ -59,11 +59,19 @@
 \begin{document}
 %\maketitle
 
-<<results="hide",echo=FALSE>>=
-require(lattice)
-require(grid)
-require(Hmisc)
-require(gridBase)
+<<load_libraries,results="hide",message=FALSE,warning=FALSE,echo=FALSE>>=
+require("lattice")
+require("grid")
+require("Hmisc")
+require("gridBase")
+opts_chunk$set(dev="cairo_pdf",
+                  out.width="0.8\\textwidth",
+                  out.height="0.8\\textheight",
+                  out.extra="keepaspectratio")
+opts_chunk$set(cache=TRUE, autodep=TRUE)
+options(device = function(file, width = 6, height = 6, ...) {
+            cairo_pdf(tempfile(), width = width, height = height, ...)
+        })
 to.latex <- function(x){
   gsub("\\\\","\\\\\\\\",latexSN(x))
 }