projects / mothur.git / tree
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| -rw-r--r-- | 1095 | addtargets2.cpp | blob | history | raw |
| -rw-r--r-- | 14948 | alignchime.cpp | blob | history | raw |
| -rw-r--r-- | 8720 | alignchimel.cpp | blob | history | raw |
| -rw-r--r-- | 275 | allocs.h | blob | history | raw |
| -rw-r--r-- | 570 | alnheuristics.h | blob | history | raw |
| -rw-r--r-- | 8204 | alnparams.cpp | blob | history | raw |
| -rw-r--r-- | 1245 | alnparams.h | blob | history | raw |
| -rw-r--r-- | 70910 | alpha.cpp | blob | history | raw |
| -rw-r--r-- | 1473 | alpha.h | blob | history | raw |
| -rw-r--r-- | 2258 | alpha2.cpp | blob | history | raw |
| -rw-r--r-- | 1971 | chainer.h | blob | history | raw |
| -rw-r--r-- | 2198 | chime.h | blob | history | raw |
| -rw-r--r-- | 597 | counters.h | blob | history | raw |
| -rw-r--r-- | 4440 | diagbox.h | blob | history | raw |
| -rw-r--r-- | 5094 | dp.h | blob | history | raw |
| -rw-r--r-- | 1030 | evalue.h | blob | history | raw |
| -rw-r--r-- | 9261 | fractid.cpp | blob | history | raw |
| -rw-r--r-- | 1890 | getparents.cpp | blob | history | raw |
| -rw-r--r-- | 1005 | globalalign2.cpp | blob | history | raw |
| -rw-r--r-- | 4993 | help.h | blob | history | raw |
| -rw-r--r-- | 2041 | hsp.h | blob | history | raw |
| -rw-r--r-- | 187 | hspfinder.h | blob | history | raw |
| -rw-r--r-- | 3493 | make3way.cpp | blob | history | raw |
| -rwxr-xr-x | 1052 | mk | blob | history | raw |
| -rw-r--r-- | 6947 | mx.cpp | blob | history | raw |
| -rw-r--r-- | 10100 | mx.h | blob | history | raw |
| -rw-r--r-- | 6111 | myopts.h | blob | history | raw |
| -rw-r--r-- | 42443 | myutils.cpp | blob | history | raw |
| -rw-r--r-- | 7758 | myutils.h | blob | history | raw |
| -rw-r--r-- | 1019 | orf.h | blob | history | raw |
| -rw-r--r-- | 3248 | out.h | blob | history | raw |
| -rw-r--r-- | 3039 | path.cpp | blob | history | raw |
| -rw-r--r-- | 885 | path.h | blob | history | raw |
| -rw-r--r-- | 6700 | searchchime.cpp | blob | history | raw |
| -rw-r--r-- | 674 | seq.h | blob | history | raw |
| -rw-r--r-- | 6654 | seqdb.cpp | blob | history | raw |
| -rw-r--r-- | 2231 | seqdb.h | blob | history | raw |
| -rw-r--r-- | 1594 | setnucmx.cpp | blob | history | raw |
| -rw-r--r-- | 10203 | sfasta.cpp | blob | history | raw |
| -rw-r--r-- | 2043 | sfasta.h | blob | history | raw |
| -rw-r--r-- | 447 | svnmods.h | blob | history | raw |
| -rw-r--r-- | 5 | svnversion.h | blob | history | raw |
| -rw-r--r-- | 2803 | timers.h | blob | history | raw |
| -rw-r--r-- | 5392 | timing.h | blob | history | raw |
| -rw-r--r-- | 3014 | tracebackbit.cpp | blob | history | raw |
| -rw-r--r-- | 1920 | uc.h | blob | history | raw |
| -rw-r--r-- | 4646 | uchime_main.cpp | blob | history | raw |
| -rw-r--r-- | 121 | ultra.h | blob | history | raw |
| -rw-r--r-- | 1818 | usort.cpp | blob | history | raw |
| -rw-r--r-- | 7260 | viterbifast.cpp | blob | history | raw |
| -rw-r--r-- | 1984 | windex.h | blob | history | raw |
| -rw-r--r-- | 7234 | writechhit.cpp | blob | history | raw |