git.donarmstrong.com Git - mothur.git/shortlog

]> git.donarmstrong.com Git - mothur.git/shortlog

2013-04-08	SarahsWork	added rarepercent and keepties parameters to the filter...	commit \| commitdiff \| tree \| snapshot
2013-04-05	SarahsWork	added method parameter to get.oturep. options method...	commit \| commitdiff \| tree \| snapshot
2013-04-05	SarahsWork	sffinfo bug with flow grams right index when clipQualRi...	commit \| commitdiff \| tree \| snapshot
2013-04-03	SarahsWork	added name, group and count files to chop.seqs. added...	commit \| commitdiff \| tree \| snapshot
2013-04-03	SarahsWork	added count file to get.sabund and get.rabund commands...	commit \| commitdiff \| tree \| snapshot
2013-04-01	SarahsWork	added end of file character to some type type reads...	commit \| commitdiff \| tree \| snapshot
2013-03-25	SarahsWork	removed make count from make.contigs	commit \| commitdiff \| tree \| snapshot
2013-03-22	SarahsWork	make.contigs bug with file option and multiple processo...	commit \| commitdiff \| tree \| snapshot
2013-03-19	SarahsWork	finished dereplicate changes to chimera commands. ...	commit \| commitdiff \| tree \| snapshot
2013-03-18	SarahsWork	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-03-18	SarahsWork	working on dereplicate=t issue in chimera.slayer and...	commit \| commitdiff \| tree \| snapshot
2013-03-13	Pat Schloss	Fixed a bug in the count output of seq.error when using...	commit \| commitdiff \| tree \| snapshot
2013-03-12	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-03-12	Pat Schloss	fine tuning to make.contigs parameters	commit \| commitdiff \| tree \| snapshot
2013-03-08	SarahsWork	finished up adding N code to trim.flows	commit \| commitdiff \| tree \| snapshot
2013-03-08	SarahsWork	added N for trimOligos change	commit \| commitdiff \| tree \| snapshot
2013-03-08	SarahsWork	added N code to flow data. removed changed for trimming...	commit \| commitdiff \| tree \| snapshot
2013-03-06	SarahsWork	added pacbio parameter to fastq.info. fixed issue with...	commit \| commitdiff \| tree \| snapshot
2013-03-06	SarahsWork	<= change for anova and homova. finished chimera.uchime...	commit \| commitdiff \| tree \| snapshot
2013-03-05	SarahsWork	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-03-05	SarahsWork	working on chimera.uchime change for dereplicate=t...	commit \| commitdiff \| tree \| snapshot
2013-03-02	Pat Schloss	Added flow=I to trim.flows	commit \| commitdiff \| tree \| snapshot
2013-03-02	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-03-02	Pat Schloss	pat's mods to seqerrorcommand	commit \| commitdiff \| tree \| snapshot
2013-02-27	SarahsWork	mods to resolve some misc warnings. added alignPrimer...	commit \| commitdiff \| tree \| snapshot
2013-02-20	Pat Schloss	updated project file	commit \| commitdiff \| tree \| snapshot
2013-02-19	SarahsWork	working on topdown in pre.cluster	commit \| commitdiff \| tree \| snapshot
2013-02-18	SarahsWork	linux screen.seqs segfault	commit \| commitdiff \| tree \| snapshot
2013-02-18	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-02-18	Pat Schloss	update to new version of Xcode	commit \| commitdiff \| tree \| snapshot
2013-02-15	SarahsWork	test	commit \| commitdiff \| tree \| snapshot
2013-02-15	SarahsWork	Removed file that shouldn't be tracked	commit \| commitdiff \| tree \| snapshot
2013-02-15	SarahsWork	test	commit \| commitdiff \| tree \| snapshot
2013-02-15	SarahsWork	test commit	commit \| commitdiff \| tree \| snapshot
2013-02-13	Sarah Westcott	added trim overlap parameter to make.contigs	commit \| commitdiff \| tree \| snapshot
2013-02-13	Sarah Westcott	added merge.taxsummary command. added column format...	commit \| commitdiff \| tree \| snapshot
2013-02-12	Sarah Westcott	added order=A or order=B to trim.flows and shhh.flows...	commit \| commitdiff \| tree \| snapshot
2013-02-11	Sarah Westcott	added ':' name check to seq. error and fastq.info....	commit \| commitdiff \| tree \| snapshot
2013-02-07	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-02-07	Pat Schloss	some minor typo	commit \| commitdiff \| tree \| snapshot
2013-02-06	Sarah Westcott	added *.count.summary file to count.groups command...	commit \| commitdiff \| tree \| snapshot
2013-01-29	Sarah Westcott	added get.dists and remove.dists commands. fixed bug...	commit \| commitdiff \| tree \| snapshot
2013-01-28	Sarah Westcott	added checks to make sure windows processes completed...	commit \| commitdiff \| tree \| snapshot
2013-01-25	Sarah Westcott	added primer.design command. fixed bug with linux...	commit \| commitdiff \| tree \| snapshot
2013-01-18	Sarah Westcott	fixed seq. error align=f issue. added std and ave calcs...	commit \| commitdiff \| tree \| snapshot
2013-01-16	Sarah Westcott	added topdown parameter to pre.cluster. added more...	commit \| commitdiff \| tree \| snapshot
2013-01-11	Sarah Westcott	fixed bug in pre.cluster with output file name change...	commit \| commitdiff \| tree \| snapshot
2013-01-08	Sarah Westcott	added dereplicate parameter to chimera.slayer and chime...	commit \| commitdiff \| tree \| snapshot
2013-01-04	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2013-01-04	Sarah Westcott	added filter.shared command. fixed lci and uci for...	commit \| commitdiff \| tree \| snapshot
2013-01-03	Pat Schloss	fix bug in unaligned seq.error / chimeraref	commit \| commitdiff \| tree \| snapshot
2013-01-03	Pat Schloss	TEST	commit \| commitdiff \| tree \| snapshot
2013-01-03	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-01-03	Pat Schloss	test	commit \| commitdiff \| tree \| snapshot
2013-01-03	Pat Schloss	test	commit \| commitdiff \| tree \| snapshot
2013-01-03	Pat Schloss	test	commit \| commitdiff \| tree \| snapshot
2013-01-03	Pat Schloss	Changes to seq.error so that an alignment is not necessary	commit \| commitdiff \| tree \| snapshot
2012-12-21	Sarah Westcott	added ignore option to oligos files for make.contigs...	commit \| commitdiff \| tree \| snapshot
2012-12-21	Sarah Westcott	trim.seqs filename	commit \| commitdiff \| tree \| snapshot
2012-12-21	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-12-21	Sarah Westcott	working on make.contigs. fixed trim.seqs filename issue	commit \| commitdiff \| tree \| snapshot
2012-12-21	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-12-21	Pat Schloss	Working on seq.error changes	commit \| commitdiff \| tree \| snapshot
2012-12-18	Sarah Westcott	added sharedotu parameter to venn command. working...	commit \| commitdiff \| tree \| snapshot
2012-12-17	Sarah Westcott	fixed issue in tree.shared when shared file was not...	commit \| commitdiff \| tree \| snapshot
2012-12-14	Sarah Westcott	added warning to readBlast to warn about duplicate...	commit \| commitdiff \| tree \| snapshot
2012-12-14	Sarah Westcott	added kruskwalliscommand to Xcode project and fixed...	commit \| commitdiff \| tree \| snapshot
2012-12-14	Sarah Westcott	fixed outputName creator, added debugging to readblast	commit \| commitdiff \| tree \| snapshot
2012-12-13	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-12-13	Sarah Westcott	fixed bug in phylo.diversity rooting. added filename...	commit \| commitdiff \| tree \| snapshot
2012-12-12	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-12-12	Pat Schloss	edits to cooccurrence command	commit \| commitdiff \| tree \| snapshot
2012-11-16	Kathryn Iverson	added files for regularized random forest	commit \| commitdiff \| tree \| snapshot
2012-11-09	Kathryn Iverson	fixed rf memory issue in constructure	commit \| commitdiff \| tree \| snapshot
2012-11-06	Sarah Westcott	changed added group output to indicator command. a...	commit \| commitdiff \| tree \| snapshot
2012-11-02	Sarah Westcott	fix to summary.tax for 1.28.0	commit \| commitdiff \| tree \| snapshot
2012-10-30	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-10-30	Sarah Westcott	classify.seqs allows sequences to be in taxonomy file...	commit \| commitdiff \| tree \| snapshot
2012-10-26	Kathryn Iverson	restructuring random forest implementation	commit \| commitdiff \| tree \| snapshot
2012-10-26	Kathryn Iverson	changed random forest's inheritance	commit \| commitdiff \| tree \| snapshot
2012-10-26	Kathryn Iverson	added new class forest	commit \| commitdiff \| tree \| snapshot
2012-10-22	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-10-22	Sarah Westcott	added sets to amova and homova commands. added oligos...	commit \| commitdiff \| tree \| snapshot
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-10-22	Pat Schloss	PDS: update citation fields	commit \| commitdiff \| tree \| snapshot
2012-10-09	Sarah Westcott	changed dups parameter to dereplicate in chimera.uchime.	commit \| commitdiff \| tree \| snapshot
2012-10-09	Sarah Westcott	added dups parameter to chimera.uchime. working on...	commit \| commitdiff \| tree \| snapshot
2012-10-03	Sarah Westcott	added zap method to classify.seqs and changed bayesian...	commit \| commitdiff \| tree \| snapshot
2012-10-02	Sarah Westcott	added classify.shared command and random forest files...	commit \| commitdiff \| tree \| snapshot
2012-09-25	Sarah Westcott	added count file to get.oturep, pre.cluster, screen...	commit \| commitdiff \| tree \| snapshot
2012-09-14	Sarah Westcott	added count file to trim.seqs, get.groups, get.lineage...	commit \| commitdiff \| tree \| snapshot
2012-09-12	Sarah Westcott	optimizing classify.seqs calculating of template probab...	commit \| commitdiff \| tree \| snapshot
2012-09-11	Sarah Westcott	added count file to get.groups and remove.groups. added...	commit \| commitdiff \| tree \| snapshot
2012-09-07	Sarah Westcott	major change to the tree class to use the count table...	commit \| commitdiff \| tree \| snapshot
2012-08-24	Sarah Westcott	added sff.multiple command. fixed issue with windows...	commit \| commitdiff \| tree \| snapshot
2012-08-21	Sarah Westcott	added oligos, pdiffs, bdiffs, ldiffs, sdiffs, tiffs...	commit \| commitdiff \| tree \| snapshot
2012-08-14	Sarah Westcott	added code to format fast files for uchime. started...	commit \| commitdiff \| tree \| snapshot
2012-08-13	Sarah Westcott	added count file to chimera.uchime. found issue with...	commit \| commitdiff \| tree \| snapshot
2012-08-08	Sarah Westcott	added count parameter to chimera.slayer command	commit \| commitdiff \| tree \| snapshot
2012-08-08	Sarah Westcott	added SequenceCountParser class to parse the count...	commit \| commitdiff \| tree \| snapshot
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