git.donarmstrong.com Git - mothur.git/shortlog

]> git.donarmstrong.com Git - mothur.git/shortlog

2014-04-22	Kathryn Iverson	update .gitignore master	commit \| commitdiff \| tree \| snapshot
2014-04-09	Sarah Westcott	pre.cluster unable to spawn necessary processes adjustment.	commit \| commitdiff \| tree \| snapshot
2014-04-09	Sarah Westcott	added oligos class. added check orient parameter to...	commit \| commitdiff \| tree \| snapshot
2014-04-02	Sarah Westcott	working on sra and get.mimarkspackage commands. added...	commit \| commitdiff \| tree \| snapshot
2014-04-01	Sarah Westcott	working of get.mimarkspackage and sra command	commit \| commitdiff \| tree \| snapshot
2014-03-25	Sarah Westcott	changed int to pid_t type in fork(). roughed in get...	commit \| commitdiff \| tree \| snapshot
2014-03-25	Sarah Westcott	added mothurgetpid function. fixed bug with align.seqs...	commit \| commitdiff \| tree \| snapshot
2014-03-06	Sarah Westcott	added shared file to make.table	commit \| commitdiff \| tree \| snapshot
2014-03-05	Sarah Westcott	added shannonrange calc.	commit \| commitdiff \| tree \| snapshot
2014-02-28	Sarah Westcott	pcr.seqs bug fix. working on shannon range calc	commit \| commitdiff \| tree \| snapshot
2014-02-25	Sarah Westcott	fixed bug in make.biom with picrust that didn’t allow...	commit \| commitdiff \| tree \| snapshot
2014-02-12	Sarah Westcott	fixes while building	commit \| commitdiff \| tree \| snapshot
2014-02-11	Sarah Westcott	fixing help	commit \| commitdiff \| tree \| snapshot
2014-02-10	Sarah Westcott	fixes while testing 1.33.0	commit \| commitdiff \| tree \| snapshot
2014-02-04	Sarah Westcott	added relabund parameter to classify.seqs and summary...	commit \| commitdiff \| tree \| snapshot
2014-02-03	Sarah Westcott	added mergesfffiles command. added current directories...	commit \| commitdiff \| tree \| snapshot
2014-01-31	Sarah Westcott	fixed bug in pam	commit \| commitdiff \| tree \| snapshot
2014-01-29	Sarah Westcott	working on get.communitytype command	commit \| commitdiff \| tree \| snapshot
2014-01-21	Sarah Westcott	added rjsd calculator. improved work balance load...	commit \| commitdiff \| tree \| snapshot
2014-01-21	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2014-01-21	Sarah Westcott	working on pam	commit \| commitdiff \| tree \| snapshot
2014-01-21	Sarah Westcott	Test new machine.	commit \| commitdiff \| tree \| snapshot
2014-01-09	Pat Schloss	converted jsd calculation to be based on relative abundance	commit \| commitdiff \| tree \| snapshot
2014-01-09	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2014-01-09	Sarah Westcott	added Jensen-Shannon calc. working on get.communitytype...	commit \| commitdiff \| tree \| snapshot
2014-01-08	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2014-01-08	Pat Schloss	some changes on qFinderDMM	commit \| commitdiff \| tree \| snapshot
2013-12-03	Sarah Westcott	added oligos, group, pdiffs, bdiffs, ldiffs, sdiffs...	commit \| commitdiff \| tree \| snapshot
2013-11-19	Sarah Westcott	typo	commit \| commitdiff \| tree \| snapshot
2013-11-19	Sarah Westcott	added binary file operations to mothurout class. added...	commit \| commitdiff \| tree \| snapshot
2013-10-22	Sarah Westcott	added picrust and ref taxonomy parameters to make.biom	commit \| commitdiff \| tree \| snapshot
2013-10-18	Sarah Westcott	modifications to commands to add headers to list file.	commit \| commitdiff \| tree \| snapshot
2013-10-17	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2013-10-17	Sarah Westcott	adding labels to list file.	commit \| commitdiff \| tree \| snapshot
2013-10-17	Sarah Westcott	added fastq to list.seqs, get.seqs and remove.seqs...	commit \| commitdiff \| tree \| snapshot
2013-10-08	Sarah Westcott	added otulabels to heatmap.bin. made OTUlabels “smarter...	commit \| commitdiff \| tree \| snapshot
2013-10-02	Sarah Westcott	changes while testing	commit \| commitdiff \| tree \| snapshot
2013-09-18	Sarah Westcott	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-09-18	Sarah Westcott	added lefse command. added check for hard filter length...	commit \| commitdiff \| tree \| snapshot
2013-09-16	Kathryn Iverson	changing command name classify.shared to classifyrf...	commit \| commitdiff \| tree \| snapshot
2013-09-11	kdiverson	adding misclassification output file	commit \| commitdiff \| tree \| snapshot
2013-09-11	kdiverson	adding misclassification output file	commit \| commitdiff \| tree \| snapshot
2013-09-11	kdiverson	adding misclassification output file	commit \| commitdiff \| tree \| snapshot
2013-09-11	kdiverson	adding misclassification output file	commit \| commitdiff \| tree \| snapshot
2013-09-11	kdiverson	adding pretty confusion matrix	commit \| commitdiff \| tree \| snapshot
2013-09-11	kdiverson	adding pretty confusion matrix	commit \| commitdiff \| tree \| snapshot
2013-09-11	kdiverson	adding code for confusion matrix	commit \| commitdiff \| tree \| snapshot
2013-09-11	kdiverson	adding code for confusion matrix	commit \| commitdiff \| tree \| snapshot
2013-09-11	kdiverson	adding code for confusion matrix	commit \| commitdiff \| tree \| snapshot
2013-09-10	kdiverson	changed random forest output filename	commit \| commitdiff \| tree \| snapshot
2013-09-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-09-04	Pat Schloss	random stuff	commit \| commitdiff \| tree \| snapshot
2013-08-14	Sarah Westcott	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-08-14	Sarah Westcott	changed name of get.metacommunity to get.communitytype...	commit \| commitdiff \| tree \| snapshot
2013-08-02	Sarah Westcott	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-08-02	Sarah Westcott	Qualscore gobbles	commit \| commitdiff \| tree \| snapshot
2013-07-19	Pat Schloss	Update mgcluster to use dist=1 for missing distances...	commit \| commitdiff \| tree \| snapshot
2013-07-18	Sarah Westcott	added adjust parameter to mgcluster. fixed bug in class...	commit \| commitdiff \| tree \| snapshot
2013-07-17	Pat Schloss	asdf	commit \| commitdiff \| tree \| snapshot
2013-07-17	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-07-17	Pat Schloss	fixed problem where order=B was not checking for the...	commit \| commitdiff \| tree \| snapshot
2013-06-24	Sarah Westcott	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-06-24	Sarah Westcott	added kruskal.wallis command. added worked on make...	commit \| commitdiff \| tree \| snapshot
2013-06-24	John Westcott	test change	commit \| commitdiff \| tree \| snapshot
2013-06-13	Sarah Westcott	mgcluster with count file needed to create a nameMap...	commit \| commitdiff \| tree \| snapshot
2013-06-13	Sarah Westcott	added make.lefse command. fixed bug in make.contigs...	commit \| commitdiff \| tree \| snapshot
2013-05-29	Sarah Westcott	get.seqs not renaming sequences correctly for dups...	commit \| commitdiff \| tree \| snapshot
2013-05-29	Sarah Westcott	added rename.seqs command.	commit \| commitdiff \| tree \| snapshot
2013-05-28	Sarah Westcott	case sensitive include statement caused issues for...	commit \| commitdiff \| tree \| snapshot
2013-05-28	Sarah Westcott	citation changes for 1.31.0	commit \| commitdiff \| tree \| snapshot
2013-05-24	Sarah Westcott	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-05-24	Sarah Westcott	added debugging to otu.association	commit \| commitdiff \| tree \| snapshot
2013-05-23	Abu Zaher Md...	re-enabling the destructor to enable deletion of dynami...	commit \| commitdiff \| tree \| snapshot
2013-05-23	Abu Zaher Md...	Merge branch 'master' into dev-ml	commit \| commitdiff \| tree \| snapshot
2013-05-23	Sarah Westcott	changes while testing	commit \| commitdiff \| tree \| snapshot
2013-05-17	Sarah Westcott	changed how rarefaction commands find the lci and hci...	commit \| commitdiff \| tree \| snapshot
2013-05-17	Sarah Westcott	added modify names parameter to set.dir	commit \| commitdiff \| tree \| snapshot
2013-05-16	Kathryn Iverson	updated default parameters. These are giving better...	commit \| commitdiff \| tree \| snapshot
2013-05-16	Kathryn Iverson	cleaned up what is printed to screen	commit \| commitdiff \| tree \| snapshot
2013-05-15	Sarah Westcott	added make.lookup command.	commit \| commitdiff \| tree \| snapshot
2013-05-14	Sarah Westcott	added count file to create.database command. corrected...	commit \| commitdiff \| tree \| snapshot
2013-05-13	Sarah Westcott	cluster.split was not sorting the list file in order...	commit \| commitdiff \| tree \| snapshot
2013-05-13	Sarah Westcott	added sparcc command. fixed bug in remove.groups that...	commit \| commitdiff \| tree \| snapshot
2013-05-06	Sarah Westcott	paralellized parsimony, unifrac.unweighted, phylo.diver...	commit \| commitdiff \| tree \| snapshot
2013-05-02	Abu Zaher Md...	a lot of new input parameters in rf module, implemented...	commit \| commitdiff \| tree \| snapshot
2013-04-29	SarahsWork	added square format for phylipfile. made command work...	commit \| commitdiff \| tree \| snapshot
2013-04-29	SarahsWork	added shared, constaxonomy and label parameter to get...	commit \| commitdiff \| tree \| snapshot
2013-04-26	SarahsWork	added adjustDots function to pcr.seqs, keeps sequences...	commit \| commitdiff \| tree \| snapshot
2013-04-22	SarahsWork	paralellized make.table / count.seqs command. added...	commit \| commitdiff \| tree \| snapshot
2013-04-22	SarahsWork	added flag to count table read so that commands that...	commit \| commitdiff \| tree \| snapshot
2013-04-19	SarahsWork	added mothurOutJustToScreen function and changed all...	commit \| commitdiff \| tree \| snapshot
2013-04-19	SarahsWork	paralellized unifrac.weighted for windows. added get...	commit \| commitdiff \| tree \| snapshot
2013-04-12	SarahsWork	added get.metacommunity command.	commit \| commitdiff \| tree \| snapshot
2013-04-08	SarahsWork	added rarepercent and keepties parameters to the filter...	commit \| commitdiff \| tree \| snapshot
2013-04-05	SarahsWork	added method parameter to get.oturep. options method...	commit \| commitdiff \| tree \| snapshot
2013-04-05	SarahsWork	sffinfo bug with flow grams right index when clipQualRi...	commit \| commitdiff \| tree \| snapshot
2013-04-03	SarahsWork	added name, group and count files to chop.seqs. added...	commit \| commitdiff \| tree \| snapshot
2013-04-03	SarahsWork	added count file to get.sabund and get.rabund commands...	commit \| commitdiff \| tree \| snapshot
2013-04-01	SarahsWork	added end of file character to some type type reads...	commit \| commitdiff \| tree \| snapshot
2013-03-25	SarahsWork	removed make count from make.contigs	commit \| commitdiff \| tree \| snapshot
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