| 2009-07-30 |
pschloss | pat's edits prior to v.1.5 |
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| 2009-07-28 |
westcott | working on chimeras |
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| 2009-07-26 |
westcott | fixed bug with aligner in database class, worked on... |
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| 2009-07-22 |
westcott | worked on chimeras |
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| 2009-07-22 |
westcott | changed sequence class so that when constructor is... |
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| 2009-07-20 |
westcott | fixed bugs in venn and aligner |
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| 2009-07-14 |
westcott | *** empty log message *** |
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| 2009-07-10 |
westcott | added sorted option to get.rabund command |
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| 2009-07-09 |
westcott | added getline function to mothur and modified places... |
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| 2009-07-08 |
westcott | added stricter compilation requirements and fixed resul... |
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| 2009-07-08 |
westcott | added system command |
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| 2009-07-08 |
westcott | added remove.seqs command |
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| 2009-07-08 |
westcott | added get.seqs command |
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| 2009-07-08 |
westcott | added list.seqs command |
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| 2009-07-06 |
westcott | fixed bug in sequencedb read for windows users and... |
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| 2009-07-02 |
westcott | made changes to concensus to find a better tree. also... |
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| 2009-06-29 |
westcott | fixed misspelling on consensus |
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| 2009-06-29 |
westcott | fixed bug in bootstrap command that was caused by globa... |
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| 2009-06-29 |
westcott | modified read.otu and shared command |
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| 2009-06-25 |
westcott | added logfile feature |
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| 2009-06-23 |
pschloss | mothur v.1.4.1 |
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| 2009-06-23 |
westcott | changed how we do "smart" distancing |
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| 2009-06-22 |
westcott | worked on parselist and shared commands, removing memor... |
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| 2009-06-21 |
pschloss | This is v.1.4.0 |
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| 2009-06-19 |
westcott | version 1.4 |
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| 2009-06-19 |
westcott | version working on mac with .tellg changed to unget... |
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| 2009-06-18 |
westcott | fixed some bugs |
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| 2009-06-18 |
pschloss | added an alignreport option to screen seqs |
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| 2009-06-16 |
pschloss | a few minor things - pds |
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| 2009-06-16 |
westcott | fixed some bugs and added scriptengine |
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| 2009-06-15 |
westcott | fixing minor bugs |
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| 2009-06-15 |
westcott | removed validcommands and put its checking in commandfa... |
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| 2009-06-14 |
pschloss | merged pat's trim seqs edits with sarah's major overhau... |
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| 2009-06-12 |
westcott | broke up globaldata and moved error checking and help... |
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| 2009-06-08 |
westcott | got rid of extra temp files in dist.seqs |
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| 2009-06-08 |
westcott | added help for heatmap.sim |
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| 2009-06-08 |
westcott | added heatmap.sim command and changed heatmap to heatma... |
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| 2009-06-08 |
pschloss | fixed how seq.dists divides the matrix for multiple... |
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| 2009-06-08 |
pschloss | added some features to trim.seqs |
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| 2009-06-08 |
westcott | dist.seqs can now use n processors, and only outputs... |
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| 2009-06-07 |
pschloss | modified trim.seqs command |
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| 2009-06-06 |
pschloss | added trim.seqs command |
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| 2009-06-06 |
pschloss | added reverse.seqs command |
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| 2009-06-05 |
westcott | line and label no longer persist between commands.... |
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| 2009-06-04 |
pschloss | remove some files |
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| 2009-06-04 |
westcott | removed readseqs, readfasta, readnexus, readclustal... |
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| 2009-06-04 |
pschloss | modified filter.seqs to not store all seqs in memory... |
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| 2009-06-04 |
pschloss | *** empty log message *** |
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| 2009-06-04 |
westcott | fixed some bugs |
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| 2009-06-04 |
pschloss | pat's edits of screen.seqs and summary.seqs |
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| 2009-06-03 |
pschloss | fixed a bug in calculating the # of ambig bases |
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| 2009-06-03 |
pschloss | added screen.seqs command - pds |
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| 2009-06-03 |
westcott | added get.rabund and get.sabund command and fixed bug... |
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| 2009-06-03 |
pschloss | addition of summary.seq command [pds] |
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| 2009-06-02 |
westcott | allow user to input quit instead of quit() |
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| 2009-06-02 |
westcott | added smart distance feature and optimized all commands... |
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| 2009-06-01 |
westcott | fixed bug for windows users with read.dist |
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| 2009-06-01 |
westcott | *** empty log message *** |
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| 2009-05-27 |
westcott | fixed multiple bugs for 1.4 release |
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| 2009-05-24 |
pschloss | This contains Pat's bug fixes and updates. It represen... |
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| 2009-05-22 |
westcott | changed defaults for filter.seqs() |
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| 2009-05-22 |
westcott | changed defaults in allign.seqs command |
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| 2009-05-21 |
westcott | fixed bugs |
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| 2009-05-21 |
westcott | modified bin.seqs and get.oturep commands to include... |
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| 2009-05-21 |
westcott | added ability to put # in front of any line in the... |
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| 2009-05-21 |
westcott | fixed Thomas' calculators |
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| 2009-05-21 |
westcott | fixed blast code path problem |
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| 2009-05-21 |
westcott | added dist.shared command |
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| 2009-05-20 |
westcott | added get.repseqs command, started matrix output command |
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| 2009-05-18 |
westcott | added shen calculator |
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| 2009-05-18 |
westcott | added shen calculator |
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| 2009-05-18 |
westcott | added help for alignment code and thomas' calcs to... |
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| 2009-05-18 |
westcott | added boneh, efron, and solow calculators |
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| 2009-05-18 |
westcott | added alignment code |
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| 2009-05-15 |
westcott | fixed if defined in dist.seqs command |
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| 2009-05-15 |
westcott | fixed memory leak in collect.shared() |
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| 2009-05-15 |
westcott | speed up rarefaction.shared |
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| 2009-05-15 |
westcott | fixed bug in heatmap |
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| 2009-05-14 |
westcott | fixed memory leak in rarefact |
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| 2009-05-14 |
westcott | fixed bug in venn command |
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| 2009-05-13 |
westcott | changed name of distance command to dist.seqs |
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| 2009-05-13 |
westcott | changed all shared commands so that they read the share... |
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| 2009-05-13 |
westcott | fixed bug with getting sharedrabunds for venn, heatmap... |
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| 2009-05-12 |
westcott | added distance command and filterseqs |
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| 2009-05-08 |
westcott | altered venn command to make use of sharedchao for... |
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| 2009-05-08 |
ryabin | filterseqscommand added |
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| 2009-05-07 |
westcott | fixed concensus command and modified tree class so... |
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| 2009-05-04 |
ryabin | *** empty log message *** |
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| 2009-05-04 |
westcott | fixed xp user bug with rarefact commands and cluster... |
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| 2009-05-04 |
westcott | added concensus command and updated calcs |
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| 2009-05-04 |
westcott | added concensus command and updated calcs |
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| 2009-05-04 |
westcott | added concensus command |
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| 2009-04-24 |
pschloss | This is mothur v 1.2.0 - the April ~24, 2009 release |
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| 2009-04-23 |
pschloss | more calculator edits and added coverage and whittaker |
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| 2009-04-22 |
pschloss | modified some calculators and other stuff - pds |
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| 2009-04-22 |
westcott | changed heatmap and venn command to use vector of share... |
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| 2009-04-21 |
westcott | broke apart read matrix file |
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| 2009-04-21 |
westcott | fixed bug with get.oturep and fixed problem with errorc... |
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| 2009-04-21 |
westcott | fixed bug with parsimony(groups=all) and unifrac.unweig... |
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| 2009-04-21 |
westcott | fixed bug in venn command which caused error when user... |
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