git.donarmstrong.com Git - mothur.git/shortlog

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2009-09-04	westcott	changed reporting in ccode to only report those who...	commit \| commitdiff \| tree \| snapshot
2009-09-04	westcott	ccode working - still need to paralellize	commit \| commitdiff \| tree \| snapshot
2009-09-02	westcott	updated pats contact and mothur header info	commit \| commitdiff \| tree \| snapshot
2009-09-01	westcott	changed raredisplay to use vectors instead of files	commit \| commitdiff \| tree \| snapshot
2009-09-01	westcott	added more descriptive error messages to sharedlist	commit \| commitdiff \| tree \| snapshot
2009-08-31	westcott	checking in chimera files in progress after move to...	commit \| commitdiff \| tree \| snapshot
2009-08-13	westcott	last changes before move	commit \| commitdiff \| tree \| snapshot
2009-08-13	westcott	last changes before move	commit \| commitdiff \| tree \| snapshot
2009-08-12	westcott	removing mallard	commit \| commitdiff \| tree \| snapshot
2009-08-11	westcott	chimera.seqs pintail is working.	commit \| commitdiff \| tree \| snapshot
2009-08-10	pschloss	mothur-v.1.5.0	commit \| commitdiff \| tree \| snapshot
2009-08-06	westcott	This is 1.5.	commit \| commitdiff \| tree \| snapshot
2009-08-06	westcott	bugs fixes while testing for 1.5 release	commit \| commitdiff \| tree \| snapshot
2009-08-05	westcott	bugs fixes while testing for 1.5 release	commit \| commitdiff \| tree \| snapshot
2009-08-05	westcott	bugs fixes while testing for 1.5 release	commit \| commitdiff \| tree \| snapshot
2009-08-03	westcott	bugs for 1.5	commit \| commitdiff \| tree \| snapshot
2009-08-03	westcott	bugs for 1.5	commit \| commitdiff \| tree \| snapshot
2009-08-02	westcott	bugs fixes while testing for 1.5 release	commit \| commitdiff \| tree \| snapshot
2009-08-01	westcott	bugs fixes while testing for 1.5 release	commit \| commitdiff \| tree \| snapshot
2009-07-30	westcott	working on chimeras	commit \| commitdiff \| tree \| snapshot
2009-07-30	pschloss	pat's changes after generating wiki pages for 1.5	commit \| commitdiff \| tree \| snapshot
2009-07-30	westcott	Thallinger changes to cluster command.	commit \| commitdiff \| tree \| snapshot
2009-07-30	pschloss	pat's edits prior to v.1.5	commit \| commitdiff \| tree \| snapshot
2009-07-28	westcott	working on chimeras	commit \| commitdiff \| tree \| snapshot
2009-07-26	westcott	fixed bug with aligner in database class, worked on...	commit \| commitdiff \| tree \| snapshot
2009-07-22	westcott	worked on chimeras	commit \| commitdiff \| tree \| snapshot
2009-07-22	westcott	changed sequence class so that when constructor is...	commit \| commitdiff \| tree \| snapshot
2009-07-20	westcott	fixed bugs in venn and aligner	commit \| commitdiff \| tree \| snapshot
2009-07-14	westcott	* empty log message *	commit \| commitdiff \| tree \| snapshot
2009-07-10	westcott	added sorted option to get.rabund command	commit \| commitdiff \| tree \| snapshot
2009-07-09	westcott	added getline function to mothur and modified places...	commit \| commitdiff \| tree \| snapshot
2009-07-08	westcott	added stricter compilation requirements and fixed resul...	commit \| commitdiff \| tree \| snapshot
2009-07-08	westcott	added system command	commit \| commitdiff \| tree \| snapshot
2009-07-08	westcott	added remove.seqs command	commit \| commitdiff \| tree \| snapshot
2009-07-08	westcott	added get.seqs command	commit \| commitdiff \| tree \| snapshot
2009-07-08	westcott	added list.seqs command	commit \| commitdiff \| tree \| snapshot
2009-07-06	westcott	fixed bug in sequencedb read for windows users and...	commit \| commitdiff \| tree \| snapshot
2009-07-02	westcott	made changes to concensus to find a better tree. also...	commit \| commitdiff \| tree \| snapshot
2009-06-29	westcott	fixed misspelling on consensus	commit \| commitdiff \| tree \| snapshot
2009-06-29	westcott	fixed bug in bootstrap command that was caused by globa...	commit \| commitdiff \| tree \| snapshot
2009-06-29	westcott	modified read.otu and shared command	commit \| commitdiff \| tree \| snapshot
2009-06-25	westcott	added logfile feature	commit \| commitdiff \| tree \| snapshot
2009-06-23	pschloss	mothur v.1.4.1	commit \| commitdiff \| tree \| snapshot
2009-06-23	westcott	changed how we do "smart" distancing	commit \| commitdiff \| tree \| snapshot
2009-06-22	westcott	worked on parselist and shared commands, removing memor...	commit \| commitdiff \| tree \| snapshot
2009-06-21	pschloss	This is v.1.4.0	commit \| commitdiff \| tree \| snapshot
2009-06-19	westcott	version 1.4	commit \| commitdiff \| tree \| snapshot
2009-06-19	westcott	version working on mac with .tellg changed to unget...	commit \| commitdiff \| tree \| snapshot
2009-06-18	westcott	fixed some bugs	commit \| commitdiff \| tree \| snapshot
2009-06-18	pschloss	added an alignreport option to screen seqs	commit \| commitdiff \| tree \| snapshot
2009-06-16	pschloss	a few minor things - pds	commit \| commitdiff \| tree \| snapshot
2009-06-16	westcott	fixed some bugs and added scriptengine	commit \| commitdiff \| tree \| snapshot
2009-06-15	westcott	fixing minor bugs	commit \| commitdiff \| tree \| snapshot
2009-06-15	westcott	removed validcommands and put its checking in commandfa...	commit \| commitdiff \| tree \| snapshot
2009-06-14	pschloss	merged pat's trim seqs edits with sarah's major overhau...	commit \| commitdiff \| tree \| snapshot
2009-06-12	westcott	broke up globaldata and moved error checking and help...	commit \| commitdiff \| tree \| snapshot
2009-06-08	westcott	got rid of extra temp files in dist.seqs	commit \| commitdiff \| tree \| snapshot
2009-06-08	westcott	added help for heatmap.sim	commit \| commitdiff \| tree \| snapshot
2009-06-08	westcott	added heatmap.sim command and changed heatmap to heatma...	commit \| commitdiff \| tree \| snapshot
2009-06-08	pschloss	fixed how seq.dists divides the matrix for multiple...	commit \| commitdiff \| tree \| snapshot
2009-06-08	pschloss	added some features to trim.seqs	commit \| commitdiff \| tree \| snapshot
2009-06-08	westcott	dist.seqs can now use n processors, and only outputs...	commit \| commitdiff \| tree \| snapshot
2009-06-07	pschloss	modified trim.seqs command	commit \| commitdiff \| tree \| snapshot
2009-06-06	pschloss	added trim.seqs command	commit \| commitdiff \| tree \| snapshot
2009-06-06	pschloss	added reverse.seqs command	commit \| commitdiff \| tree \| snapshot
2009-06-05	westcott	line and label no longer persist between commands....	commit \| commitdiff \| tree \| snapshot
2009-06-04	pschloss	remove some files	commit \| commitdiff \| tree \| snapshot
2009-06-04	westcott	removed readseqs, readfasta, readnexus, readclustal...	commit \| commitdiff \| tree \| snapshot
2009-06-04	pschloss	modified filter.seqs to not store all seqs in memory...	commit \| commitdiff \| tree \| snapshot
2009-06-04	pschloss	* empty log message *	commit \| commitdiff \| tree \| snapshot
2009-06-04	westcott	fixed some bugs	commit \| commitdiff \| tree \| snapshot
2009-06-04	pschloss	pat's edits of screen.seqs and summary.seqs	commit \| commitdiff \| tree \| snapshot
2009-06-03	pschloss	fixed a bug in calculating the # of ambig bases	commit \| commitdiff \| tree \| snapshot
2009-06-03	pschloss	added screen.seqs command - pds	commit \| commitdiff \| tree \| snapshot
2009-06-03	westcott	added get.rabund and get.sabund command and fixed bug...	commit \| commitdiff \| tree \| snapshot
2009-06-03	pschloss	addition of summary.seq command [pds]	commit \| commitdiff \| tree \| snapshot
2009-06-02	westcott	allow user to input quit instead of quit()	commit \| commitdiff \| tree \| snapshot
2009-06-02	westcott	added smart distance feature and optimized all commands...	commit \| commitdiff \| tree \| snapshot
2009-06-01	westcott	fixed bug for windows users with read.dist	commit \| commitdiff \| tree \| snapshot
2009-06-01	westcott	* empty log message *	commit \| commitdiff \| tree \| snapshot
2009-05-27	westcott	fixed multiple bugs for 1.4 release	commit \| commitdiff \| tree \| snapshot
2009-05-24	pschloss	This contains Pat's bug fixes and updates. It represen...	commit \| commitdiff \| tree \| snapshot
2009-05-22	westcott	changed defaults for filter.seqs()	commit \| commitdiff \| tree \| snapshot
2009-05-22	westcott	changed defaults in allign.seqs command	commit \| commitdiff \| tree \| snapshot
2009-05-21	westcott	fixed bugs	commit \| commitdiff \| tree \| snapshot
2009-05-21	westcott	modified bin.seqs and get.oturep commands to include...	commit \| commitdiff \| tree \| snapshot
2009-05-21	westcott	added ability to put # in front of any line in the...	commit \| commitdiff \| tree \| snapshot
2009-05-21	westcott	fixed Thomas' calculators	commit \| commitdiff \| tree \| snapshot
2009-05-21	westcott	fixed blast code path problem	commit \| commitdiff \| tree \| snapshot
2009-05-21	westcott	added dist.shared command	commit \| commitdiff \| tree \| snapshot
2009-05-20	westcott	added get.repseqs command, started matrix output command	commit \| commitdiff \| tree \| snapshot
2009-05-18	westcott	added shen calculator	commit \| commitdiff \| tree \| snapshot
2009-05-18	westcott	added shen calculator	commit \| commitdiff \| tree \| snapshot
2009-05-18	westcott	added help for alignment code and thomas' calcs to...	commit \| commitdiff \| tree \| snapshot
2009-05-18	westcott	added boneh, efron, and solow calculators	commit \| commitdiff \| tree \| snapshot
2009-05-18	westcott	added alignment code	commit \| commitdiff \| tree \| snapshot
2009-05-15	westcott	fixed if defined in dist.seqs command	commit \| commitdiff \| tree \| snapshot
2009-05-15	westcott	fixed memory leak in collect.shared()	commit \| commitdiff \| tree \| snapshot
2009-05-15	westcott	speed up rarefaction.shared	commit \| commitdiff \| tree \| snapshot
2009-05-15	westcott	fixed bug in heatmap	commit \| commitdiff \| tree \| snapshot
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