From e98d569d630c30d1ac3608eb6337bcec4765a724 Mon Sep 17 00:00:00 2001
From: Kathryn Iverson <kd.iverson@gmail.com>
Date: Wed, 20 Jun 2012 16:56:35 -0400
Subject: [PATCH] added createRabund function to mgcluster

---
 mgclustercommand.cpp | 11 ++++++++---
 mgclustercommand.h   |  1 +
 2 files changed, 9 insertions(+), 3 deletions(-)

diff --git a/mgclustercommand.cpp b/mgclustercommand.cpp
index c4cdb50..a0f33d6 100644
--- a/mgclustercommand.cpp
+++ b/mgclustercommand.cpp
@@ -235,12 +235,12 @@ int MGClusterCommand::execute(){
         RAbundVector* rabund = NULL;
         if(large) {
             map<string, int> nameMapCounts = m->readNames(namefile);
-            RAbundVector* rabund = newFunctionToCreateRabund(list, nameMapCounts);
+            RAbundVector* rabund = createRabund(list, nameMapCounts);
         }else {
             RAbundVector* rabund = new RAbundVector(list->getRAbundVector());
         }
         
-        
+                
 		//list = new ListVector(nameMap->getListVector());
 		//RAbundVector* rabund = new RAbundVector(list->getRAbundVector());
 		
@@ -709,7 +709,12 @@ void MGClusterCommand::sortHclusterFiles(string unsortedDist, string unsortedOve
 
 //**********************************************************************************************************************
 
+RAbundVector MGClusterCommand::createRabund(ListVector list, map<string, int> nameMapCounts){
+    for(int i = 0; i < list->getNumBins(); i++) { 
+    
+    }
+}
 
-
+//**********************************************************************************************************************
 
 
diff --git a/mgclustercommand.h b/mgclustercommand.h
index ea2c1de..889586a 100644
--- a/mgclustercommand.h
+++ b/mgclustercommand.h
@@ -61,6 +61,7 @@ private:
 	ListVector* mergeOPFs(map<string, int>, float);
 	void sortHclusterFiles(string, string);
 	vector<seqDist> getSeqs(ifstream&);
+    RAbundVector createRabund(ListVector, map<string, int>);
 
 };
 
-- 
2.39.2