From e2c0017527ca0cc9baff39ab41d5c61a9507100c Mon Sep 17 00:00:00 2001 From: pschloss Date: Wed, 30 Mar 2011 11:33:08 +0000 Subject: [PATCH] made dups=T default in get.seqs --- getseqscommand.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/getseqscommand.cpp b/getseqscommand.cpp index 68d0d2b..6d4bff2 100644 --- a/getseqscommand.cpp +++ b/getseqscommand.cpp @@ -218,7 +218,7 @@ GetSeqsCommand::GetSeqsCommand(string option) { else if (qualfile == "not found") { qualfile = ""; } string usedDups = "true"; - string temp = validParameter.validFile(parameters, "dups", false); if (temp == "not found") { temp = "false"; usedDups = ""; } + string temp = validParameter.validFile(parameters, "dups", false); if (temp == "not found") { temp = "true"; usedDups = ""; } dups = m->isTrue(temp); if ((fastafile == "") && (namefile == "") && (groupfile == "") && (alignfile == "") && (listfile == "") && (taxfile == "") && (qualfile == "") && (accnosfile2 == "")) { m->mothurOut("You must provide one of the following: fasta, name, group, alignreport, taxonomy, quality or listfile."); m->mothurOutEndLine(); abort = true; } -- 2.39.2